Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   GFB47_RS06180 Genome accession   NZ_CP045699
Coordinates   1336683..1338107 (+) Length   474 a.a.
NCBI ID   WP_153447187.1    Uniprot ID   A0A5Q0TJ84
Organism   Vibrio algicola strain SM1977     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1331683..1343107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFB47_RS06155 (GFB47_06145) - 1332340..1333029 (-) 690 WP_178306488.1 sulfite exporter TauE/SafE family protein -
  GFB47_RS06160 (GFB47_06150) - 1333271..1333720 (+) 450 WP_153447183.1 TerB family tellurite resistance protein -
  GFB47_RS06165 (GFB47_06155) - 1333787..1334506 (-) 720 WP_153447184.1 hypothetical protein -
  GFB47_RS06170 (GFB47_06160) - 1334619..1335533 (-) 915 WP_153447185.1 hypothetical protein -
  GFB47_RS16765 - 1335889..1336068 (+) 180 WP_218619078.1 phage integrase N-terminal SAM-like domain-containing protein -
  GFB47_RS16770 - 1336029..1336175 (+) 147 WP_218619079.1 phage integrase N-terminal SAM-like domain-containing protein -
  GFB47_RS06180 (GFB47_06175) sbcB 1336683..1338107 (+) 1425 WP_153447187.1 exodeoxyribonuclease I Machinery gene
  GFB47_RS06185 (GFB47_06180) - 1338130..1338525 (+) 396 WP_153447188.1 CidA/LrgA family protein -
  GFB47_RS06190 (GFB47_06185) - 1338527..1339213 (+) 687 WP_153447189.1 LrgB family protein -
  GFB47_RS06195 (GFB47_06190) cdd 1339556..1340446 (+) 891 WP_153447190.1 cytidine deaminase -
  GFB47_RS06200 (GFB47_06195) purT 1340618..1341793 (+) 1176 WP_153447191.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  GFB47_RS06205 (GFB47_06200) - 1341842..1342486 (-) 645 WP_153447192.1 thiopurine S-methyltransferase -
  GFB47_RS06210 (GFB47_06205) ihfA 1342552..1342848 (-) 297 WP_153447193.1 integration host factor subunit alpha -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54045.29 Da        Isoelectric Point: 4.9773

>NTDB_id=396074 GFB47_RS06180 WP_153447187.1 1336683..1338107(+) (sbcB) [Vibrio algicola strain SM1977]
MQNNEQPTFFFFDYETWGVSPAKDRPSQFAGVRTDADFNIIGEPLVIYCKPPADYLPNPEAALVTGIKPQLTVQKGLPEP
EFIRLIHEQFAQPNTTSLGYNNVRFDDEVTRYTLYRNFYDPYAWSWQNGNSRWDLLDVMRTCYALRPDGINWPENDDGLP
SFKLDRLSVANGIEHSNAHDAMADVIATIELAKKLKAAQPKLFNYLLNMRHKNKLKAQIDIVNMTPLMHVSGMFGVQRSN
TSWIVPMAWHPTNANAVIVVDLAKDPSPLLELDAEQLQKRLYTKRDDLAPDELPVPIKLVHLNKCPILAPAKTLTAENAA
NIGIDRAQCLANLAILKANPEIREKLIGLYSIEREYPQDDNVDTQLYSGFFSPADKSTMDIIRETKPENLAGLELSVKDS
RIAPLLFRYRARNYPATLNEQEQDQWRAHCREYFEANLEDYLLNLENLAHEHESDSAKMDVLKAVYQYVESIAS

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=396074 GFB47_RS06180 WP_153447187.1 1336683..1338107(+) (sbcB) [Vibrio algicola strain SM1977]
ATGCAAAACAATGAGCAACCAACTTTTTTCTTCTTCGATTATGAAACATGGGGCGTGAGTCCGGCTAAAGACAGACCTAG
CCAATTTGCTGGGGTGCGCACCGATGCCGATTTCAATATTATTGGCGAGCCTTTGGTGATTTACTGCAAGCCGCCTGCCG
ATTACCTACCTAATCCAGAAGCGGCATTAGTGACTGGAATTAAACCGCAACTCACCGTGCAAAAAGGACTGCCTGAGCCT
GAATTCATTCGCCTTATCCATGAACAATTCGCTCAGCCCAATACCACGTCATTAGGCTATAACAATGTGCGTTTTGACGA
TGAAGTCACCCGCTACACTCTCTATCGTAATTTCTACGATCCGTATGCATGGTCATGGCAAAACGGCAATTCGCGTTGGG
ATTTATTAGATGTGATGCGGACTTGTTACGCGCTGCGCCCAGATGGCATCAATTGGCCAGAAAACGACGATGGACTGCCA
AGTTTTAAACTCGATCGACTGTCGGTTGCCAACGGTATCGAACACAGTAATGCTCATGATGCGATGGCGGATGTGATCGC
CACCATCGAACTGGCGAAAAAATTAAAAGCTGCGCAACCTAAGCTATTCAATTACCTGCTCAATATGCGCCATAAAAACA
AATTAAAAGCACAAATTGATATTGTGAACATGACGCCCTTAATGCATGTCTCTGGCATGTTTGGTGTGCAGCGTTCTAAT
ACCAGTTGGATTGTGCCAATGGCGTGGCACCCAACTAACGCTAATGCGGTGATTGTGGTCGATCTGGCTAAAGATCCTAG
CCCATTACTGGAATTAGACGCCGAACAGCTGCAAAAACGTTTATATACCAAGCGAGATGATTTAGCGCCCGATGAACTGC
CGGTTCCGATAAAACTGGTGCATCTCAATAAGTGCCCAATCCTAGCGCCTGCAAAAACCTTAACCGCAGAAAATGCCGCC
AACATAGGGATCGATCGCGCCCAGTGCTTGGCTAATTTGGCCATATTAAAAGCCAATCCTGAGATCCGCGAAAAATTAAT
CGGTTTGTACAGTATTGAGCGTGAATATCCGCAAGATGATAATGTGGATACCCAGCTTTATTCAGGCTTTTTCTCACCTG
CCGATAAATCAACAATGGATATTATCCGTGAAACAAAACCGGAGAATCTAGCCGGTTTAGAGCTTTCGGTTAAAGACTCC
CGGATCGCCCCCTTATTATTCCGTTACCGCGCTCGAAATTACCCTGCGACACTCAATGAGCAAGAACAAGACCAATGGCG
CGCACATTGCCGAGAATACTTTGAAGCTAACCTTGAAGATTACCTCCTAAATCTTGAGAATCTTGCACACGAACATGAAA
GTGATAGCGCGAAAATGGACGTTCTGAAAGCGGTGTATCAATATGTTGAATCGATCGCTTCTTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-191)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5Q0TJ84

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

73.629

100

0.736

Multiple sequence alignment