Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   DEIMA_RS03905 Genome accession   NC_014958
Coordinates   858452..860659 (+) Length   735 a.a.
NCBI ID   WP_245528346.1    Uniprot ID   -
Organism   Deinococcus maricopensis DSM 21211     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 853452..865659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DEIMA_RS03880 (Deima_0765) - 854304..854969 (+) 666 WP_013555926.1 recombinase family protein -
  DEIMA_RS18170 (Deima_0766) - 854992..855150 (-) 159 WP_013555927.1 hypothetical protein -
  DEIMA_RS17755 - 855191..855802 (-) 612 WP_148234896.1 hypothetical protein -
  DEIMA_RS03885 (Deima_0767) - 856736..857629 (-) 894 WP_013555928.1 tyrosine-type recombinase/integrase -
  DEIMA_RS03900 (Deima_0768) comEA 858033..858410 (+) 378 WP_013555929.1 helix-hairpin-helix domain-containing protein Machinery gene
  DEIMA_RS03905 (Deima_0769) comEC 858452..860659 (+) 2208 WP_245528346.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DEIMA_RS16750 (Deima_0770) - 860742..861755 (+) 1014 WP_013555931.1 hypothetical protein -
  DEIMA_RS03915 (Deima_0771) - 861834..862322 (-) 489 WP_013555932.1 hypothetical protein -
  DEIMA_RS03920 (Deima_0772) - 862382..863146 (-) 765 WP_013555933.1 nitroreductase family protein -
  DEIMA_RS03925 (Deima_0773) - 863218..863949 (+) 732 WP_013555934.1 hypothetical protein -
  DEIMA_RS03930 (Deima_0774) rimO 864093..865526 (+) 1434 WP_013555935.1 30S ribosomal protein S12 methylthiotransferase RimO -

Sequence

Protein


Download         Length: 735 a.a.        Molecular weight: 76901.63 Da        Isoelectric Point: 10.9385

>NTDB_id=39594 DEIMA_RS03905 WP_245528346.1 858452..860659(+) (comEC) [Deinococcus maricopensis DSM 21211]
MTPVVASAVVLERGRRAFLPWPVVGALALMAGVLVAFGAWWGALLLAVVAGAAAWVRAPALMLVALVCFGVGFARERAWW
AAPDVMTPWVGARVTLSGEWDGQFLRLADPPARVSVRPKPRVDPGRVTVAGVLVRPEGRRTPGGFDEAFWLRTSGVRTVL
VGARGRAYAPEAGVRGWFRRGLNVGLSARQAALMEAVELGDRSDIGREAFEDGVAVREAFNRAGLAHLMALSGQNVALLL
GALAFVLVRSPVARVRAWLLVPALGAYWWLVGESPSVDRACLMALAVLLGTATGRGRLDVYGVIGLAAMASLALHPAWLF
DVGFQLSFLAVLALTLTPRVAAMVPRLGERHRVVRALVYGAAATLLAEAATLPVVAHTFGTVPLVGLPANLVAELIMGAL
VPLGFLAGLLGPLAVVVNPLVGVLADALLAVAQAAGRAPVLTWGNVSAAGFAAYGVFALAGVLAVLGRVRPPAFLAVAGV
LALGTLLPAHLSPPRDITYLDVGQGDSTLIRANGLRVLIDGGGSPGSDFDVGARTVVPALRALGVRALDVVVATHADADH
VEGLTAVLNTLPVGELWVGHRHEADPVLRAVLDAARARGVRVREVRRGDHVQAGDVALNVLWPRGAPWSAADNDNSVAVR
LEALTFRTAFLGDLPSSVEDTLGLGRLSVLKLAHHGSRHSSSAALLRETAPADAIISVGRNTYGHPHGDVLDRLAGAHVR
AWRTDQLGTVTWPIP

Nucleotide


Download         Length: 2208 bp        

>NTDB_id=39594 DEIMA_RS03905 WP_245528346.1 858452..860659(+) (comEC) [Deinococcus maricopensis DSM 21211]
GTGACGCCGGTGGTGGCGTCGGCGGTGGTGCTGGAGCGGGGGCGGCGGGCGTTCCTGCCGTGGCCGGTGGTGGGGGCGCT
GGCGTTGATGGCGGGGGTGCTGGTGGCGTTCGGCGCGTGGTGGGGGGCGCTGCTGCTGGCGGTCGTGGCGGGCGCGGCGG
CGTGGGTGCGGGCGCCGGCGTTGATGCTGGTGGCGCTGGTGTGTTTCGGGGTGGGGTTCGCGCGGGAGCGGGCGTGGTGG
GCCGCGCCGGATGTGATGACGCCGTGGGTGGGCGCGCGGGTGACGCTGAGCGGCGAGTGGGACGGGCAGTTCCTGCGGTT
GGCGGACCCGCCGGCGCGCGTGTCGGTGCGGCCGAAGCCGCGCGTGGATCCGGGGCGGGTGACGGTGGCGGGGGTGTTGG
TGCGGCCGGAGGGGCGGCGCACGCCGGGCGGGTTCGATGAGGCGTTCTGGTTGCGGACGTCGGGCGTGCGGACGGTGCTG
GTAGGCGCGCGGGGGCGGGCGTACGCGCCGGAGGCGGGGGTGCGCGGGTGGTTCCGGCGGGGCCTGAACGTGGGCCTGAG
TGCGCGGCAGGCGGCGCTGATGGAGGCCGTTGAGCTGGGGGACCGGAGCGACATCGGGCGGGAGGCGTTTGAGGATGGCG
TGGCGGTGCGCGAGGCGTTCAACCGGGCGGGCCTGGCGCACCTGATGGCGCTGAGTGGGCAGAACGTGGCGTTGCTGCTG
GGGGCGTTGGCGTTCGTGCTGGTGCGGTCGCCGGTGGCGCGCGTGCGGGCGTGGCTGCTGGTGCCGGCGTTGGGGGCGTA
CTGGTGGCTGGTGGGGGAGAGCCCGAGCGTGGACCGGGCGTGTCTGATGGCGCTGGCGGTGCTGCTGGGCACGGCGACGG
GGCGCGGGCGGTTGGATGTGTACGGCGTGATTGGCCTTGCGGCGATGGCGAGCCTGGCGCTGCATCCGGCGTGGCTGTTC
GACGTGGGGTTTCAGTTGTCGTTCCTGGCGGTGTTGGCGTTGACGCTCACGCCGCGCGTAGCGGCCATGGTGCCGCGTTT
GGGGGAGCGACACCGGGTGGTGCGCGCCCTGGTGTACGGCGCGGCGGCGACGCTGCTGGCGGAGGCGGCGACCCTGCCGG
TGGTGGCGCATACGTTCGGGACGGTGCCGCTGGTGGGTCTGCCCGCGAACCTCGTGGCGGAGCTGATCATGGGGGCGCTG
GTGCCGCTGGGGTTCCTGGCTGGCCTGCTGGGGCCGCTCGCGGTGGTCGTGAATCCGCTGGTGGGTGTGCTCGCGGACGC
GCTGCTGGCGGTGGCGCAGGCGGCGGGGCGCGCGCCGGTGCTCACGTGGGGGAACGTGAGCGCGGCGGGCTTCGCGGCGT
ACGGGGTATTCGCGCTTGCGGGGGTGCTGGCGGTGCTGGGCCGAGTGCGCCCGCCTGCATTCCTGGCGGTCGCGGGCGTG
CTCGCGCTGGGCACGTTGCTGCCCGCGCACCTGAGTCCGCCGCGCGACATCACGTACCTGGACGTCGGGCAGGGCGACAG
CACGCTCATCCGCGCGAACGGCCTGCGCGTCCTGATTGACGGGGGTGGCAGTCCCGGCAGTGACTTCGACGTGGGCGCCC
GCACGGTCGTGCCGGCCCTGCGCGCCCTGGGTGTGCGCGCGCTCGACGTCGTCGTGGCGACGCACGCGGACGCGGATCAC
GTGGAGGGCCTCACGGCCGTCCTGAACACCCTGCCGGTCGGGGAGCTGTGGGTCGGGCACCGCCACGAGGCCGACCCGGT
CCTGCGGGCCGTGCTGGACGCCGCCCGCGCGCGTGGTGTGCGCGTCCGTGAGGTGCGGCGCGGCGACCACGTGCAGGCGG
GCGACGTGGCCCTGAACGTCCTGTGGCCGCGCGGCGCGCCGTGGAGTGCCGCGGACAACGACAACAGCGTCGCCGTGCGC
CTGGAAGCGCTGACGTTCCGCACGGCGTTCCTTGGGGACCTGCCCAGTTCGGTAGAGGACACCCTTGGCCTGGGGCGCCT
CAGCGTCCTCAAGCTCGCGCACCATGGCAGCCGCCACAGCAGCAGCGCTGCCCTCCTGCGCGAAACGGCGCCCGCCGACG
CGATCATCAGTGTGGGGCGCAACACCTACGGCCACCCGCACGGCGACGTGCTGGACCGCCTCGCGGGCGCGCACGTGCGC
GCGTGGCGCACCGATCAGCTGGGCACGGTCACCTGGCCGATCCCCTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(216-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(501-698)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.346

90.476

0.528

Multiple sequence alignment