Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   DEIMA_RS03900 Genome accession   NC_014958
Coordinates   858033..858410 (+) Length   125 a.a.
NCBI ID   WP_013555929.1    Uniprot ID   E8U5T5
Organism   Deinococcus maricopensis DSM 21211     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 853033..863410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DEIMA_RS17750 (Deima_0764) - 853375..854226 (-) 852 WP_013555925.1 hypothetical protein -
  DEIMA_RS03880 (Deima_0765) - 854304..854969 (+) 666 WP_013555926.1 recombinase family protein -
  DEIMA_RS18170 (Deima_0766) - 854992..855150 (-) 159 WP_013555927.1 hypothetical protein -
  DEIMA_RS17755 - 855191..855802 (-) 612 WP_148234896.1 hypothetical protein -
  DEIMA_RS03885 (Deima_0767) - 856736..857629 (-) 894 WP_013555928.1 tyrosine-type recombinase/integrase -
  DEIMA_RS03900 (Deima_0768) comEA 858033..858410 (+) 378 WP_013555929.1 helix-hairpin-helix domain-containing protein Machinery gene
  DEIMA_RS03905 (Deima_0769) comEC 858452..860659 (+) 2208 WP_245528346.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DEIMA_RS16750 (Deima_0770) - 860742..861755 (+) 1014 WP_013555931.1 hypothetical protein -
  DEIMA_RS03915 (Deima_0771) - 861834..862322 (-) 489 WP_013555932.1 hypothetical protein -
  DEIMA_RS03920 (Deima_0772) - 862382..863146 (-) 765 WP_013555933.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 125 a.a.        Molecular weight: 12969.03 Da        Isoelectric Point: 7.9829

>NTDB_id=39593 DEIMA_RS03900 WP_013555929.1 858033..858410(+) (comEA) [Deinococcus maricopensis DSM 21211]
MSWSLEGRWTAVLGALTLAVCGWALWPAVVPGARAPEVTRVAVPEVRAQAVAPEYPATGSVQPLISGRVNLNSASLEQLE
ALPGVGPAMAARLVAGRPYRSLADLDAVRGVGEATLARLSPLVSF

Nucleotide


Download         Length: 378 bp        

>NTDB_id=39593 DEIMA_RS03900 WP_013555929.1 858033..858410(+) (comEA) [Deinococcus maricopensis DSM 21211]
ATGTCGTGGAGTCTGGAGGGCCGCTGGACGGCCGTGTTGGGGGCGTTGACGCTGGCGGTGTGCGGGTGGGCTTTGTGGCC
GGCGGTGGTGCCGGGTGCGCGTGCACCGGAGGTGACGCGCGTGGCGGTGCCGGAGGTGCGGGCGCAGGCGGTGGCGCCGG
AGTACCCGGCGACAGGAAGTGTGCAGCCGCTGATTTCCGGGCGGGTGAACCTGAATTCGGCGTCGCTGGAGCAGCTGGAG
GCGCTGCCGGGGGTGGGGCCGGCGATGGCGGCGCGGTTGGTGGCGGGGCGGCCGTATCGTTCGCTGGCGGATCTGGATGC
GGTGCGTGGGGTGGGGGAGGCGACGCTCGCGCGTCTGTCGCCGTTGGTGAGCTTCTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(68-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E8U5T5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.656

97.6

0.592

Multiple sequence alignment