Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   GFH30_RS11385 Genome accession   NZ_CP045650
Coordinates   2382914..2383549 (+) Length   211 a.a.
NCBI ID   WP_153372705.1    Uniprot ID   A0A5Q0P707
Organism   Acinetobacter wanghuae strain dk386     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2377914..2388549
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFH30_RS11375 (GFH30_11370) - 2380051..2380848 (-) 798 WP_153372701.1 NAD-dependent epimerase/dehydratase family protein -
  GFH30_RS11380 (GFH30_11375) recG 2380882..2382927 (+) 2046 WP_153372703.1 ATP-dependent DNA helicase RecG -
  GFH30_RS11385 (GFH30_11380) comF 2382914..2383549 (+) 636 WP_153372705.1 ComF family protein Machinery gene
  GFH30_RS11390 (GFH30_11385) - 2383551..2383952 (-) 402 WP_153372707.1 NUDIX domain-containing protein -
  GFH30_RS11395 (GFH30_11390) - 2383973..2384572 (-) 600 WP_153373458.1 TIGR00730 family Rossman fold protein -
  GFH30_RS11400 (GFH30_11395) - 2384726..2385739 (+) 1014 WP_153372708.1 CorA family divalent cation transporter -
  GFH30_RS11405 (GFH30_11400) - 2385881..2386168 (-) 288 WP_153372710.1 lipid asymmetry maintenance protein MlaB -
  GFH30_RS11410 (GFH30_11405) - 2386181..2386807 (-) 627 WP_153372712.1 phospholipid-binding protein MlaC -
  GFH30_RS11415 (GFH30_11410) - 2386825..2387496 (-) 672 WP_153372714.1 outer membrane lipid asymmetry maintenance protein MlaD -
  GFH30_RS11420 (GFH30_11415) mlaE 2387496..2388275 (-) 780 WP_153372716.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24197.32 Da        Isoelectric Point: 8.8555

>NTDB_id=395917 GFH30_RS11385 WP_153372705.1 2382914..2383549(+) (comF) [Acinetobacter wanghuae strain dk386]
MPMSNLIKQAKTWLQQLQPCQLCGSDYQHIHSVCEDCWSQLPWAKTTVQRQEMQVHIACDYTYPMDRMIQLFKYEQKLHL
QNVLAGTLLSLRLPKVSAIVPMPISTERLVERGYNQSLVLAKHVAKHLNVPIWQPITRRSQHSQKGLSRLERMDDIEAQF
EISTQSKLCYRRVLIIDDVVTTGSSIHALKLKLEALGCREIYAACIAGAKI

Nucleotide


Download         Length: 636 bp        

>NTDB_id=395917 GFH30_RS11385 WP_153372705.1 2382914..2383549(+) (comF) [Acinetobacter wanghuae strain dk386]
ATGCCTATGTCTAATTTAATTAAGCAAGCGAAAACTTGGCTGCAGCAGTTACAGCCTTGCCAACTCTGTGGTAGTGATTA
TCAGCACATTCATTCTGTATGTGAGGATTGTTGGTCACAGCTCCCTTGGGCAAAAACCACAGTGCAACGTCAGGAAATGC
AGGTTCATATTGCCTGTGACTATACCTATCCGATGGATCGAATGATTCAACTGTTTAAATATGAACAAAAACTACATTTG
CAAAATGTGTTGGCAGGGACATTACTCAGTTTAAGGCTGCCCAAAGTCAGTGCGATCGTGCCTATGCCTATCTCAACAGA
ACGTTTGGTCGAGCGTGGTTATAACCAATCGTTGGTCTTAGCGAAACACGTTGCTAAACATCTGAACGTTCCAATTTGGC
AGCCGATTACCCGACGTTCACAGCACTCACAAAAAGGCTTAAGTCGACTTGAACGTATGGACGATATCGAAGCGCAATTT
GAAATCAGCACACAGTCTAAATTATGTTATCGACGTGTGCTGATTATTGATGATGTCGTCACCACAGGCAGCTCAATTCA
CGCACTTAAGCTCAAACTTGAAGCCTTAGGTTGTCGAGAAATTTATGCTGCCTGTATTGCGGGGGCAAAAATTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(116-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5Q0P707

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

58.673

92.891

0.545
  comF Acinetobacter baumannii D1279779

58.163

92.891

0.54

Multiple sequence alignment