Detailed information    

insolico Bioinformatically predicted

Overview


Name   chpA   Type   Regulator
Locus tag   GFH30_RS09880 Genome accession   NZ_CP045650
Coordinates   2076469..2081064 (-) Length   1531 a.a.
NCBI ID   WP_153372205.1    Uniprot ID   A0A5Q0P4H4
Organism   Acinetobacter wanghuae strain dk386     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context


Location: 2071469..2086064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFH30_RS09850 (GFH30_09845) elsL 2072545..2073060 (-) 516 WP_153389219.1 cell wall-recycling L,D-carboxypeptidase ElsL -
  GFH30_RS09855 (GFH30_09850) - 2073062..2073451 (-) 390 WP_153372196.1 YbaN family protein -
  GFH30_RS09860 (GFH30_09855) - 2073538..2074401 (+) 864 WP_153372198.1 DUF1853 family protein -
  GFH30_RS09865 (GFH30_09860) - 2074528..2074677 (+) 150 WP_153372200.1 entericidin A/B family lipoprotein -
  GFH30_RS09870 (GFH30_09865) dapE 2074798..2075931 (+) 1134 WP_153372201.1 succinyl-diaminopimelate desuccinylase -
  GFH30_RS09875 (GFH30_09870) - 2076007..2076465 (-) 459 WP_153372203.1 hypothetical protein -
  GFH30_RS09880 (GFH30_09875) chpA 2076469..2081064 (-) 4596 WP_153372205.1 Hpt domain-containing protein Regulator
  GFH30_RS09885 (GFH30_09880) - 2081229..2083301 (-) 2073 WP_153372207.1 methyl-accepting chemotaxis protein -
  GFH30_RS09890 (GFH30_09885) - 2083346..2083882 (-) 537 WP_153372209.1 chemotaxis protein CheW -
  GFH30_RS09895 (GFH30_09890) - 2083888..2084256 (-) 369 WP_153372211.1 response regulator -
  GFH30_RS09900 (GFH30_09895) pilG 2084281..2084664 (-) 384 WP_153372212.1 twitching motility response regulator PilG Regulator
  GFH30_RS09905 (GFH30_09900) - 2084949..2085587 (+) 639 WP_153373443.1 hypothetical protein -

Sequence


Protein


Download         Length: 1531 a.a.        Molecular weight: 171052.86 Da        Isoelectric Point: 4.2748

>NTDB_id=395914 GFH30_RS09880 WP_153372205.1 2076469..2081064(-) (chpA) [Acinetobacter wanghuae strain dk386]
MKEILKNLVETTLLPEDEYLTQDAEILDIFVEELEEIFEELNAIFPQWLSNPDDPEILATVRRHFHTLKGSGRMVGAKVA
GELAWAVEDTLNRVKSGAIPLTPTVQQYAKAALNVFQYTLYPSFKQVASLTIDVRPLVLLGQQLQKQQSPEPSLEELLSL
ADTLTAEGQLTGLEWASTEETAAAAVHTDVINEPTEVSVATADAHFAASDVEETLAIFLEEAEEHLATITKFLSNTDEKT
QDYNGLIRALHTLRGSSSMAHIDEIFDASSKVENLFKNLVQDEISSSSKETGLLQQYVEFVSDYLHILPQGNTEKLHQIY
QTFDRIWNDYGFANDESNAVLQPQGIVSKLIELNIDLLLDAEFEFDSRIQDEYPNYVEILSQEAAELLQHTDNRASQGIY
DFTADLKLAYDALIVKPQLLSGNYVYELFAQAHQEFIHLFDTLAAGQRVILTEETQNLLSELVAYIQQDIEVFAESDVAE
HAIDTDEKQDVSEVASSVEMPTAAGVDFAALNQRIASDRAQQDAPDANRDFDGDLVDIFLEEADELLVGIDQDLNTWSKN
HVDTTSLNNLMRYLHTLKGGANMIAASHIGSIAHELESIYERVIRKQIPVTSTLIQIIRLVQDNISDRIQSIRDDLVDYP
APAAIDILQNIQGIVDGQSTVHVAALEQTMSEVVVEAESASVTPDASTEENVTALESIDGVHTLSEAVDLETNEANDVLN
ESVAEHTEQDAEFEVTTKEVSPAFENKAVLSEEEELQSIVEETFLEEAEEILANTEKLLNQWFDQRSDRSLLLQLQRAVH
SIKGGARMMANETIATIAYELETTFEQFAVHHFNSNAYDALLLKTLEWLKTAIFKREYDNFEHIRSALEAIEYVDVTAQL
PERLTKTESLSASTSFEFVQGDGSEPPSMLGEWSESNNTDSNNEMIRISADLVEKMIDLSGENAINRSRIEMDLGQLGNT
LNEMELAIKRLADQLRRMDGELESQIIAKHGNENSRYADFDPLEMDQYSSLNQLSKSLAESASDLVDFKSTLSNKIRDTE
GLLLQQSRIQAEIQESLMRTRLVPFDRMLPRLQRIVRQTSTTLNRPAELIVQNTEGELDRTILERLVTPFEHMLRNAIDH
GIEDTAERIALNKPEVGSIVLNISRQGTDVIVSFSDDGKGIDAERIREKAISLNLVQPEQAIDSEELLQFIFHPGFSTAK
AVTQISGRGVGLDVVQSEIKSLGGHVSIQSELGKGTTFTIRVPTTVAVSDALMVKAGDQQFAISLAQIDRIVRIAPSTLE
TYFNSKEDFFKIDGQDYKLRYVSEFVSNQPIPRLNNVMHSLPVLLIKGNHGQTTALLVDQLVGSRAQIVVKPIGVQFANV
GVVAGATILGDGQVCLILDGQNVARQIQATQRIKHHIDQREQRSSDSRRLVMIVDDSVTVRKVTSRLLERQGYDVVTAKD
GVDAIEQLENIRPDLMLLDIEMPRMDGFEVTNLVRHHEIHRDLPIIMITSRTGEKHRERAFNLGVTHYMGKPFQEAELLA
NVQDLIAEKQG

Nucleotide


Download         Length: 4596 bp        

>NTDB_id=395914 GFH30_RS09880 WP_153372205.1 2076469..2081064(-) (chpA) [Acinetobacter wanghuae strain dk386]
ATGAAAGAAATATTAAAAAATTTAGTAGAAACGACATTGCTTCCCGAAGATGAGTATTTAACTCAAGATGCAGAGATTTT
AGATATTTTTGTTGAGGAGTTAGAGGAAATCTTTGAAGAGCTGAATGCTATATTTCCACAATGGTTATCGAACCCTGATG
ACCCAGAAATTCTTGCAACAGTACGTCGCCATTTTCATACCTTAAAAGGTTCAGGACGCATGGTGGGCGCAAAGGTTGCA
GGCGAACTGGCTTGGGCAGTTGAAGATACCTTAAATCGAGTTAAATCAGGCGCAATTCCGTTAACGCCGACTGTGCAACA
ATATGCCAAAGCGGCATTGAACGTCTTTCAATATACGCTTTACCCAAGCTTCAAACAGGTTGCAAGCCTAACCATTGATG
TGCGCCCATTGGTGCTTTTAGGTCAACAATTACAAAAACAACAAAGTCCTGAACCTTCGCTCGAAGAGTTGCTCAGTCTT
GCCGACACGTTAACAGCTGAAGGGCAATTGACAGGCTTAGAATGGGCAAGTACTGAAGAAACTGCAGCAGCTGCCGTTCA
TACTGATGTGATTAATGAACCAACAGAAGTATCTGTAGCAACTGCTGATGCGCATTTTGCTGCGAGTGATGTTGAAGAAA
CACTAGCGATCTTCCTTGAAGAAGCGGAAGAGCACCTTGCAACGATTACTAAATTCTTAAGTAATACAGATGAAAAAACT
CAAGATTATAATGGGCTGATTCGAGCGCTGCATACTTTACGTGGTAGCTCGTCTATGGCACATATTGATGAAATCTTTGA
TGCCAGTTCTAAAGTTGAAAACCTATTTAAAAACTTAGTCCAAGATGAAATTAGCTCAAGCTCTAAAGAAACGGGACTCT
TGCAGCAATATGTTGAATTTGTCAGTGATTATTTACATATTCTGCCTCAAGGTAATACTGAAAAATTGCATCAGATTTAT
CAAACATTTGACCGTATTTGGAATGATTACGGCTTTGCCAATGATGAATCAAATGCAGTGCTGCAACCGCAAGGTATTGT
CAGCAAACTCATCGAACTGAATATTGACTTATTGCTCGATGCTGAATTTGAATTTGATAGCCGTATTCAAGATGAATATC
CAAACTATGTTGAGATTCTTAGTCAAGAAGCTGCGGAATTATTGCAACATACCGATAACCGCGCATCGCAAGGCATTTAT
GATTTCACCGCAGATTTAAAATTAGCTTATGATGCATTAATCGTTAAACCACAATTGCTGAGCGGCAATTATGTGTACGA
GCTATTTGCGCAGGCACATCAAGAATTTATTCATTTATTCGATACATTAGCCGCTGGTCAACGGGTCATTTTAACTGAAG
AAACACAGAACTTACTCAGTGAATTGGTAGCTTATATTCAGCAAGATATTGAAGTTTTTGCTGAGTCAGATGTTGCAGAA
CATGCAATTGATACAGACGAGAAACAGGATGTTTCTGAAGTTGCATCATCTGTTGAAATGCCGACTGCCGCAGGGGTCGA
TTTCGCTGCACTCAACCAACGTATTGCATCAGATCGTGCACAACAAGATGCACCTGATGCCAATCGTGACTTTGATGGTG
ATCTTGTTGATATCTTCTTAGAAGAAGCGGATGAACTATTGGTGGGTATTGATCAGGACTTAAATACATGGTCAAAAAAT
CACGTTGATACCACTTCTTTAAATAATTTAATGCGTTATTTGCACACCTTAAAAGGTGGCGCGAATATGATTGCCGCATC
GCATATCGGTTCAATTGCGCATGAACTAGAAAGTATTTATGAACGTGTTATTCGTAAGCAAATTCCAGTTACATCTACAC
TCATTCAAATTATCCGTTTAGTTCAAGATAATATTTCCGATCGTATTCAATCCATTCGTGATGATTTAGTTGATTATCCT
GCTCCGGCAGCAATTGATATTTTGCAAAATATCCAAGGCATTGTAGATGGTCAGTCCACGGTTCATGTGGCAGCTCTCGA
ACAAACGATGTCAGAAGTCGTGGTTGAAGCTGAAAGTGCTTCAGTAACTCCAGATGCCTCAACAGAAGAGAATGTGACAG
CGCTAGAGTCGATAGATGGTGTTCACACGCTTTCAGAAGCCGTTGATCTTGAGACCAATGAGGCTAATGACGTACTTAAC
GAATCTGTTGCTGAGCATACAGAACAGGATGCTGAATTTGAAGTAACGACAAAAGAAGTGTCACCTGCATTTGAAAATAA
AGCGGTACTGAGTGAAGAAGAGGAACTTCAATCGATTGTTGAAGAAACCTTCTTAGAAGAAGCAGAAGAGATTTTAGCCA
ATACTGAGAAGCTCCTTAATCAATGGTTTGATCAACGTAGTGACCGAAGTTTATTACTTCAATTACAACGTGCAGTACAT
AGTATTAAAGGTGGCGCACGTATGATGGCGAATGAAACCATCGCCACCATTGCTTATGAGCTAGAGACCACGTTTGAACA
GTTTGCAGTACATCATTTCAATTCAAATGCATACGATGCCTTATTATTAAAAACGCTTGAATGGTTAAAGACAGCGATCT
TTAAACGCGAGTATGACAATTTTGAGCATATTCGTTCGGCATTAGAAGCGATTGAATATGTCGATGTGACTGCGCAATTG
CCAGAGCGTTTAACCAAAACTGAAAGCCTTTCTGCGAGCACGAGTTTCGAATTTGTGCAGGGTGATGGTTCAGAACCACC
AAGTATGCTCGGTGAATGGTCAGAATCGAATAATACCGATAGTAACAATGAAATGATCCGAATCTCGGCAGATTTGGTCG
AGAAAATGATTGATCTTTCTGGTGAAAATGCGATTAACCGTTCACGTATTGAGATGGATCTTGGTCAGCTCGGGAATACC
TTGAACGAGATGGAACTCGCGATCAAACGTCTTGCTGATCAGTTACGTCGTATGGATGGTGAGTTAGAATCACAAATTAT
TGCGAAACATGGCAATGAAAATTCACGCTATGCTGATTTTGACCCATTAGAAATGGATCAATATTCATCTTTGAATCAAT
TGTCAAAATCATTGGCGGAATCTGCGTCGGATTTGGTGGACTTTAAAAGTACGCTGTCTAATAAAATTCGTGATACCGAA
GGTTTATTGTTACAACAATCGCGTATTCAGGCTGAAATTCAAGAAAGCTTAATGCGTACCCGTTTGGTGCCGTTTGATCG
GATGCTACCACGATTACAACGTATTGTGCGTCAAACATCGACCACACTTAACCGTCCAGCAGAATTAATCGTTCAAAATA
CTGAAGGTGAATTAGACCGTACCATTCTTGAACGCTTAGTCACACCATTTGAGCACATGCTACGAAATGCGATTGACCAT
GGTATTGAGGACACAGCAGAACGTATCGCTTTGAACAAGCCAGAAGTTGGTTCAATTGTGCTCAATATTAGCCGTCAAGG
CACCGATGTTATTGTCTCCTTTAGTGATGATGGTAAAGGGATCGATGCAGAACGTATTCGTGAAAAAGCCATCAGTTTGA
ATTTAGTTCAACCTGAACAAGCGATTGATTCAGAAGAGCTATTACAATTTATTTTCCACCCAGGTTTCAGTACTGCAAAA
GCGGTGACTCAAATTTCAGGACGCGGTGTGGGTCTAGACGTTGTCCAAAGTGAAATTAAATCACTGGGTGGGCATGTTTC
AATTCAATCCGAATTGGGTAAAGGCACAACCTTTACCATTCGTGTACCGACAACGGTTGCGGTCAGCGATGCCTTAATGG
TCAAAGCGGGCGATCAACAATTTGCAATTTCGTTGGCACAAATTGACCGTATTGTACGTATCGCACCATCGACCTTAGAA
ACCTATTTCAATAGCAAAGAAGACTTCTTTAAAATTGATGGGCAAGATTATAAATTACGTTACGTGTCCGAGTTCGTTTC
CAATCAACCGATTCCACGTCTAAACAACGTTATGCATTCTTTGCCTGTATTGTTAATTAAAGGCAATCATGGACAAACCA
CTGCTTTATTGGTGGATCAACTCGTCGGTTCGCGTGCACAAATTGTGGTGAAACCAATTGGGGTACAGTTTGCCAATGTC
GGCGTGGTTGCAGGCGCAACGATTTTGGGTGATGGTCAAGTTTGTCTGATTCTCGATGGACAAAATGTGGCGCGTCAGAT
TCAAGCAACGCAACGAATCAAACACCATATTGATCAGCGTGAGCAACGTTCAAGTGATTCACGCCGTTTAGTGATGATTG
TGGATGACTCAGTGACGGTACGTAAAGTAACTTCACGTCTACTTGAGCGTCAAGGTTATGATGTGGTGACTGCCAAAGAT
GGTGTCGATGCGATTGAGCAACTTGAAAATATTAGACCAGATTTGATGTTGCTCGATATTGAGATGCCACGTATGGATGG
TTTTGAAGTGACCAATTTGGTTCGCCATCACGAAATTCATCGCGATTTGCCGATTATTATGATTACTTCAAGAACTGGTG
AGAAACATCGTGAACGTGCATTTAACTTGGGCGTAACGCACTATATGGGTAAACCATTCCAAGAAGCTGAATTATTGGCA
AATGTGCAAGATTTAATTGCTGAAAAACAGGGCTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chpA Acinetobacter baumannii strain A118

57.871

100

0.586


Multiple sequence alignment