Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   GFH30_RS07700 Genome accession   NZ_CP045650
Coordinates   1630860..1631375 (-) Length   171 a.a.
NCBI ID   WP_153371674.1    Uniprot ID   A0A5Q0P3V1
Organism   Acinetobacter wanghuae strain dk386     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1625860..1636375
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFH30_RS07670 (GFH30_07665) tadA 1626026..1626574 (-) 549 WP_153371668.1 tRNA adenosine(34) deaminase TadA -
  GFH30_RS07675 (GFH30_07670) - 1626578..1627702 (-) 1125 WP_153371669.1 enoyl-CoA hydratase/isomerase family protein -
  GFH30_RS07680 (GFH30_07675) ung 1627699..1628412 (-) 714 WP_153371670.1 uracil-DNA glycosylase -
  GFH30_RS07685 (GFH30_07680) - 1628462..1629058 (-) 597 WP_153371671.1 6-carboxytetrahydropterin synthase -
  GFH30_RS07690 (GFH30_07685) gspK 1629188..1630135 (-) 948 WP_153371672.1 type II secretion system minor pseudopilin GspK -
  GFH30_RS07695 (GFH30_07690) xcpW 1630153..1630863 (-) 711 WP_153371673.1 type II secretion system minor pseudopilin GspJ Machinery gene
  GFH30_RS07700 (GFH30_07695) xcpV 1630860..1631375 (-) 516 WP_153371674.1 type II secretion system minor pseudopilin GspI Machinery gene
  GFH30_RS07705 (GFH30_07700) - 1631365..1631916 (-) 552 WP_153371675.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  GFH30_RS07710 (GFH30_07705) - 1631926..1632540 (-) 615 WP_153371676.1 TetR/AcrR family transcriptional regulator -
  GFH30_RS07715 (GFH30_07710) - 1632586..1633359 (-) 774 WP_153371677.1 TatD family hydrolase -
  GFH30_RS07720 (GFH30_07715) - 1633387..1633728 (-) 342 WP_153371678.1 PilZ domain-containing protein -
  GFH30_RS07725 (GFH30_07720) - 1633747..1634730 (-) 984 WP_153371679.1 DNA polymerase III subunit delta' -
  GFH30_RS07730 (GFH30_07725) kdsB 1634745..1635506 (-) 762 WP_153371680.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19367.23 Da        Isoelectric Point: 9.3130

>NTDB_id=395912 GFH30_RS07700 WP_153371674.1 1630860..1631375(-) (xcpV) [Acinetobacter wanghuae strain dk386]
MQVRYFFESIYSDISKLLKSNANRIQRLYAQPISLSYEVRKQHLILRSSGFTLLEVMVALAIFATAAMTLTKVAMQYTQA
TSHAILRTKAQFVALNEAAHMDIHQEWLSGTASRKVTQQGEMWQIDKKAEATISPNVQRVDIQVSLVNSDTEQVEAGISS
LTFFNHKVEEK

Nucleotide


Download         Length: 516 bp        

>NTDB_id=395912 GFH30_RS07700 WP_153371674.1 1630860..1631375(-) (xcpV) [Acinetobacter wanghuae strain dk386]
ATGCAAGTTAGATATTTCTTTGAAAGCATTTACTCTGATATCAGTAAGCTATTGAAGTCCAATGCGAATCGAATTCAGCG
CCTGTACGCTCAACCTATTTCGTTGTCTTACGAAGTAAGAAAGCAGCATCTGATTCTTCGCAGCTCAGGTTTTACATTAC
TTGAAGTGATGGTTGCACTTGCGATCTTTGCCACCGCTGCCATGACATTAACCAAGGTTGCAATGCAATATACGCAAGCG
ACCTCGCATGCCATTCTCAGAACCAAAGCGCAGTTCGTTGCTTTAAATGAAGCGGCACATATGGATATTCATCAAGAGTG
GTTAAGCGGCACAGCTTCGCGAAAAGTCACCCAACAAGGCGAAATGTGGCAAATTGATAAAAAAGCAGAAGCGACCATTA
GTCCCAATGTACAACGTGTAGATATACAAGTGAGTTTGGTCAATTCAGATACCGAGCAAGTGGAAGCAGGTATCAGTAGC
CTGACTTTTTTCAATCATAAGGTTGAAGAAAAATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(47-70)

Type II secretion system (T2SS), protein I (T2SSI)

(87-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5Q0P3V1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

67.46

73.684

0.497

Multiple sequence alignment