Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   HPM96_RS16475 Genome accession   NZ_CP053852
Coordinates   3422811..3423548 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain CE1628     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3417811..3428548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPM96_RS16460 (HPM96_16455) clpC 3418265..3420838 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  HPM96_RS16465 (HPM96_16460) yfiH 3420968..3421699 (-) 732 WP_000040134.1 purine nucleoside phosphorylase YfiH -
  HPM96_RS16470 (HPM96_16465) rluD 3421696..3422676 (-) 981 WP_000079097.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  HPM96_RS16475 (HPM96_16470) comL 3422811..3423548 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  HPM96_RS16480 (HPM96_16475) - 3423652..3424998 (+) 1347 WP_024179531.1 IS4-like element IS4 family transposase -
  HPM96_RS16485 (HPM96_16480) raiA 3425259..3425600 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  HPM96_RS16490 (HPM96_16485) pheL 3425704..3425751 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  HPM96_RS16495 (HPM96_16490) pheA 3425850..3427010 (+) 1161 WP_000200124.1 bifunctional chorismate mutase/prephenate dehydratase -
  HPM96_RS16500 (HPM96_16495) tyrA 3427053..3428174 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=395885 HPM96_RS16475 WP_000197686.1 3422811..3423548(+) (comL) [Escherichia coli strain CE1628]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=395885 HPM96_RS16475 WP_000197686.1 3422811..3423548(+) (comL) [Escherichia coli strain CE1628]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTACTATACAGA
ACGTGGTGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376