Detailed information NTG0395849

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: GFM36_RS20425
• Genome accession: NZ_CP045645
• Coordinates: 354069..354929 (-)
• Length: 286 a.a.
• NCBI ID: WP_001152269.1
• Uniprot ID: -
• Organism: Acinetobacter baumannii strain XH1056
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 349069..359929

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GFM36_RS01660 (GFM36_01645)	-	349961..351271 (+)	1311	WP_020752743.1	tetratricopeptide repeat protein	-
GFM36_RS01665 (GFM36_01650)	-	351348..351674 (+)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
GFM36_RS01670 (GFM36_01655)	rlmB	351776..352525 (+)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
GFM36_RS01675 (GFM36_01660)	-	352560..353474 (+)	915	WP_000075015.1	DMT family transporter	-
GFM36_RS01680 (GFM36_01665)	coaE	353471..354067 (-)	597	WP_000874124.1	dephospho-CoA kinase	-
GFM36_RS20425 (GFM36_01670)	pilD	354069..354929 (-)	861	WP_001152269.1	A24 family peptidase	Machinery gene
GFM36_RS01695 (GFM36_01675)	pilC	354929..356155 (-)	1227	WP_000279215.1	type II secretion system F family protein	Machinery gene
GFM36_RS01700 (GFM36_01680)	pilB	356185..357897 (-)	1713	WP_001274989.1	type IV-A pilus assembly ATPase PilB	Machinery gene
GFM36_RS01705 (GFM36_01685)	tpiA	358188..358982 (+)	795	WP_000016939.1	triose-phosphate isomerase	-
GFM36_RS01710 (GFM36_01690)	secG	358995..359324 (+)	330	WP_000555570.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32029.45 Da
• Isoelectric Point: 6.6663

>NTDB_id=395849 GFM36_RS20425 WP_001152269.1 354069..354929(-) (pilD) [Acinetobacter baumannii strain XH1056]
MQDIIAYFIQNLTALYIAVALMSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IPWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=395849 GFM36_RS20425 WP_001152269.1 354069..354929(-) (pilD) [Acinetobacter baumannii strain XH1056]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCATGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTAATTTACCGCACGCCAAAAATGATGGAACAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCCATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCCTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCAATCAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTCGTCATGGTGTTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACTTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCTTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	98.601	100	0.986
pilD	Acinetobacter nosocomialis M2	98.252	100	0.983
pilD	Vibrio cholerae strain A1552	53.676	95.105	0.51
pilD	Vibrio campbellii strain DS40M4	52.399	94.755	0.497
pilD	Neisseria gonorrhoeae MS11	47.348	92.308	0.437