Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   SGGB_RS05605 Genome accession   NC_017576
Coordinates   1120067..1121137 (+) Length   356 a.a.
NCBI ID   WP_003064732.1    Uniprot ID   A0A1H9NID7
Organism   Streptococcus gallolyticus subsp. gallolyticus ATCC 43143     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1115067..1126137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGGB_RS05590 (SGGB_1069) ffh 1115185..1116750 (+) 1566 WP_014620144.1 signal recognition particle protein -
  SGGB_RS05595 (SGGB_1070) - 1116816..1117832 (-) 1017 WP_014620145.1 helix-turn-helix domain-containing protein -
  SGGB_RS05600 (SGGB_1071) - 1118006..1119754 (+) 1749 WP_014620146.1 ABC transporter ATP-binding protein -
  SGGB_RS05605 (SGGB_1072) xerS 1120067..1121137 (+) 1071 WP_003064732.1 tyrosine recombinase XerS Machinery gene
  SGGB_RS05610 (SGGB_1073) - 1121243..1121923 (-) 681 WP_009854191.1 LexA family transcriptional regulator -
  SGGB_RS05615 (SGGB_1074) - 1122007..1122954 (-) 948 WP_009854192.1 sensor histidine kinase -
  SGGB_RS05620 (SGGB_1075) braR 1122951..1123613 (-) 663 WP_012961975.1 response regulator transcription factor Regulator
  SGGB_RS05625 (SGGB_1076) - 1123701..1125680 (-) 1980 WP_009854194.1 FtsX-like permease family protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41334.41 Da        Isoelectric Point: 9.4174

>NTDB_id=39555 SGGB_RS05605 WP_003064732.1 1120067..1121137(+) (xerS) [Streptococcus gallolyticus subsp. gallolyticus ATCC 43143]
MKREKLLEKIDELKEIMPWYVLDYYQSKLSVPYSFTTLYEYLKEYRRFFEWLLDSGISDVTKIADVELTTLEHLSKKDME
SFILYLRERPSLNTYSTKQGVSQTTINRTLSALSSLFKYLTEEVEDENGEPYFYRNVMKKIATKKKKETLAARAENIKGK
LFLGDETMAFIDYIDTEYQNKLSHRALSSFQKNKERDLALIALLLASGVRLSEAVNLDLKDLNLNMMVIEVTRKGGKRDS
VNVANFAKPYLEAYLQIRAPRYKAEKQDQALFLTEYRGVPNRIDASSVEKLVAKYSQDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDKL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=39555 SGGB_RS05605 WP_003064732.1 1120067..1121137(+) (xerS) [Streptococcus gallolyticus subsp. gallolyticus ATCC 43143]
ATGAAACGTGAAAAATTACTTGAAAAAATTGATGAACTTAAAGAAATAATGCCTTGGTACGTCTTAGACTATTACCAATC
AAAACTTTCGGTTCCTTATAGTTTCACAACTTTATATGAATACTTAAAAGAATATCGCCGATTTTTCGAATGGCTTTTGG
ATTCTGGAATTTCAGATGTTACTAAAATTGCTGACGTTGAATTAACGACTCTGGAACATCTTTCTAAAAAAGACATGGAA
TCATTCATCCTTTATCTGCGTGAACGTCCTTCTTTGAACACTTATTCAACAAAACAAGGTGTCTCACAAACAACGATTAA
TCGGACGTTATCGGCACTTTCAAGCCTGTTTAAATACCTAACAGAAGAGGTCGAAGATGAAAATGGTGAGCCCTACTTCT
ATCGAAATGTCATGAAAAAAATCGCTACTAAGAAGAAAAAAGAAACGCTGGCAGCTCGAGCTGAAAATATAAAAGGCAAA
CTTTTCCTAGGTGACGAGACCATGGCATTTATCGACTATATCGATACAGAGTATCAAAATAAGCTCTCTCACCGCGCCCT
CTCCTCCTTCCAAAAGAATAAGGAGCGTGATTTAGCGCTTATTGCTCTTCTGCTTGCCTCTGGTGTCCGTCTTTCAGAAG
CTGTTAATCTTGATTTGAAAGACTTAAACCTTAATATGATGGTTATCGAAGTCACTCGTAAAGGTGGAAAACGTGATTCT
GTCAATGTTGCTAACTTTGCTAAGCCTTATTTAGAAGCTTATTTGCAAATCAGAGCGCCTCGCTATAAGGCGGAAAAACA
AGACCAAGCTCTCTTTTTAACAGAATATCGCGGTGTTCCTAACCGTATTGATGCTTCAAGTGTTGAAAAGTTAGTTGCTA
AATACTCTCAAGATTTCAAAGTTCGTGTAACACCCCACAAACTACGCCACACACTTGCAACACGTCTTTACGATGCTACT
AAATCACAAGTCCTAGTTAGCCACCAATTAGGACATGCCAGTACACAAGTTACCGACTTATACACCCATATTGTCAACGA
CGAACAAAAAAATGCCTTAGATAAGCTTTAA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)

Phage integrase family (Phage_integrase)

(191-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1H9NID7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

83.427

100

0.834

Multiple sequence alignment