Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   GFB63_RS10930 Genome accession   NZ_CP045596
Coordinates   1171832..1172227 (+) Length   131 a.a.
NCBI ID   WP_252989162.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain TK-P3A     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1166832..1177227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFB63_RS06015 (GFB63_06185) - 1167978..1168517 (+) 540 WP_372585740.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  GFB63_RS06020 (GFB63_06190) - 1168828..1169385 (+) 558 WP_111679227.1 ECF transporter S component -
  GFB63_RS06025 (GFB63_06195) - 1169388..1170038 (+) 651 WP_193838187.1 phosphatase PAP2 family protein -
  GFB63_RS06030 (GFB63_06200) comR 1170233..1171132 (+) 900 WP_111679231.1 helix-turn-helix domain-containing protein Regulator
  GFB63_RS10925 - 1171370..1171666 (+) 297 Protein_1151 cysteine peptidase family C39 domain-containing protein -
  GFB63_RS10930 comA 1171832..1172227 (+) 396 WP_252989162.1 ABC transporter transmembrane domain-containing protein Regulator
  GFB63_RS10935 (GFB63_06210) comA 1172311..1172781 (+) 471 WP_265578820.1 ABC transporter transmembrane domain-containing protein Regulator
  GFB63_RS06045 (GFB63_06215) - 1172836..1173405 (+) 570 WP_265578821.1 ATP-binding cassette domain-containing protein -
  GFB63_RS06050 (GFB63_06220) - 1173512..1173778 (+) 267 WP_228024372.1 DUF805 domain-containing protein -
  GFB63_RS10605 - 1173989..1174468 (-) 480 WP_228024373.1 DUF4153 domain-containing protein -
  GFB63_RS10610 - 1174910..1175281 (-) 372 WP_224107488.1 hypothetical protein -
  GFB63_RS06060 (GFB63_06240) - 1175686..1176201 (+) 516 WP_024704185.1 AmiS/UreI family transporter -
  GFB63_RS06065 (GFB63_06245) - 1176226..1176528 (+) 303 WP_100273340.1 urease subunit gamma -
  GFB63_RS06070 (GFB63_06250) - 1176540..1176851 (+) 312 WP_100273339.1 urease subunit beta -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14792.58 Da        Isoelectric Point: 7.1587

>NTDB_id=395502 GFB63_RS10930 WP_252989162.1 1171832..1172227(+) (comA) [Streptococcus thermophilus strain TK-P3A]
MTLVNIIGSYYLQSIIDRLIPQEDYSLLIVISLGLCIAYLAQQVFTFFKDYLLHRLGNYLSISVILPYIKHVLSLPISFF
GSRRTGEITSRFRDANTIIDALASTILSIFLDVTIVITLAVALILQTVLFF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=395502 GFB63_RS10930 WP_252989162.1 1171832..1172227(+) (comA) [Streptococcus thermophilus strain TK-P3A]
GTGACCCTTGTTAATATTATTGGTTCTTATTATTTGCAGTCTATTATAGACCGCTTGATTCCTCAAGAAGACTATTCTCT
TCTGATTGTGATTTCTCTCGGTTTGTGCATCGCCTATCTAGCCCAACAAGTCTTCACTTTTTTCAAAGATTATCTTCTAC
ATCGATTGGGTAATTACTTGTCCATTTCTGTTATCCTTCCTTATATTAAACATGTCCTTTCTTTGCCCATTAGTTTCTTC
GGTTCACGTCGTACTGGTGAAATCACGTCACGTTTTAGAGATGCCAACACCATTATCGATGCTCTAGCTTCAACAATCTT
ATCGATTTTCCTAGATGTCACCATTGTGATAACTTTAGCTGTCGCCCTTATTTTACAAACCGTTCTCTTTTTTTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(3-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis NCTC 12261

61.364

100

0.618
  comA Streptococcus gordonii str. Challis substr. CH1

61.364

100

0.618
  comA Streptococcus pneumoniae Rx1

60.606

100

0.611
  comA Streptococcus pneumoniae D39

60.606

100

0.611
  comA Streptococcus pneumoniae TIGR4

60.606

100

0.611
  comA Streptococcus pneumoniae R6

60.606

100

0.611
  comA Streptococcus mitis SK321

60.606

100

0.611
  comA/nlmT Streptococcus mutans UA159

58.333

100

0.588

Multiple sequence alignment