Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   GFB63_RS02075 Genome accession   NZ_CP045596
Coordinates   419714..420748 (-) Length   344 a.a.
NCBI ID   WP_372450197.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain TK-P3A     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 414714..425748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFB63_RS02050 (GFB63_02110) ilvD 414981..416699 (-) 1719 WP_023909890.1 dihydroxy-acid dehydratase -
  GFB63_RS02055 (GFB63_02115) - 416812..417993 (+) 1182 WP_193838361.1 NAD(P)/FAD-dependent oxidoreductase -
  GFB63_RS02065 (GFB63_02125) trmB 418214..418855 (-) 642 WP_046206494.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  GFB63_RS02070 (GFB63_02130) ccrZ 418865..419656 (-) 792 WP_002951667.1 cell cycle regulator CcrZ -
  GFB63_RS02075 (GFB63_02135) pptB 419714..420748 (-) 1035 WP_372450197.1 ABC transporter permease Regulator
  GFB63_RS02080 (GFB63_02140) pptA 420748..421479 (-) 732 WP_084829044.1 ABC transporter ATP-binding protein Regulator
  GFB63_RS02085 (GFB63_02145) - 421544..421969 (+) 426 WP_100273371.1 HIT family protein -
  GFB63_RS02090 (GFB63_02150) - 421966..422262 (+) 297 WP_084829046.1 hypothetical protein -
  GFB63_RS02095 (GFB63_02155) - 422282..422632 (-) 351 WP_084829047.1 ribonuclease -
  GFB63_RS02100 (GFB63_02160) - 422670..423014 (-) 345 WP_100273370.1 hypothetical protein -
  GFB63_RS02105 (GFB63_02165) - 423034..423531 (-) 498 WP_223899742.1 hypothetical protein -
  GFB63_RS02110 (GFB63_02170) - 423592..424767 (-) 1176 WP_193838362.1 IS256-like element IS1191 family transposase -

Sequence


Protein


Download         Length: 344 a.a.        Molecular weight: 40089.57 Da        Isoelectric Point: 10.6158

>NTDB_id=395450 GFB63_RS02075 WP_372450197.1 419714..420748(-) (pptB) [Streptococcus thermophilus strain TK-P3A]
MAELFKERSRRFTTRCAKYSRYVFNDHFILVLLFLLGFVLVQYSQLLRHFPKNPWAIILGLLVLCFLLPFWGNIATYLEP
ADKHYLLVKEEEVLDHIKKATGRAFRFWVLIQTLIFILVVPLFLALGLPVWGVVLIAVAMAILKYFIFQKKAQPFYKQSG
LNWTDAIAAENKRQQSILKFFSLFTNVKGITSSVKRRGYLDGILKRTKKDKKHTWYNLYLRAFLRSGDYFALSLRLFALT
LLVIFLVPEKWLAMVLVVVFDYLLLFQLTVLKSHFAYQRMANLMPIGKDMQVSNLKRLINQIVLVMTLIQALCLFDLKFS
LILVGVMLVLSLVYLPAKLKKMID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=395450 GFB63_RS02075 WP_372450197.1 419714..420748(-) (pptB) [Streptococcus thermophilus strain TK-P3A]
ATAGCTGAGCTTTTTAAGGAGCGTAGCAGACGATTCACCACCCGTTGTGCTAAGTATAGTCGCTACGTCTTTAATGACCA
CTTTATCCTGGTTCTTCTTTTTTTGCTGGGTTTTGTCTTGGTTCAGTATAGCCAGTTGCTCCGACATTTTCCAAAGAATC
CATGGGCCATCATTCTTGGCTTACTTGTGCTTTGTTTTTTACTGCCTTTTTGGGGCAATATTGCCACCTATTTAGAGCCT
GCAGACAAGCACTACCTCTTAGTTAAGGAAGAAGAGGTGCTAGACCATATTAAGAAGGCGACAGGGCGTGCTTTTAGATT
TTGGGTACTCATCCAGACCTTGATTTTTATCTTGGTCGTCCCACTCTTTCTGGCCTTGGGTCTTCCAGTTTGGGGAGTTG
TCCTTATAGCCGTGGCTATGGCTATTCTTAAGTATTTTATTTTCCAAAAGAAAGCACAACCTTTTTATAAGCAGTCTGGG
TTGAATTGGACTGATGCTATTGCAGCGGAGAATAAACGACAACAATCAATCTTGAAGTTTTTCTCACTTTTTACCAATGT
TAAGGGAATTACATCGAGTGTTAAACGCCGTGGCTATTTGGATGGCATTCTCAAGCGTACAAAGAAAGACAAGAAACATA
CGTGGTACAACCTGTACCTAAGAGCCTTCTTACGTTCAGGAGATTACTTTGCCCTTAGCCTACGCCTTTTTGCTTTAACA
CTTTTGGTTATTTTTTTGGTTCCTGAAAAATGGCTGGCTATGGTACTTGTGGTTGTTTTTGACTATCTCTTACTCTTCCA
GCTCACAGTGCTTAAATCGCACTTTGCTTACCAAAGGATGGCCAACCTTATGCCAATTGGAAAAGACATGCAGGTGAGCA
ATCTTAAGCGCTTGATTAATCAAATTGTCCTTGTAATGACACTGATTCAGGCTCTTTGTCTCTTTGACCTTAAATTTAGC
CTGATTTTGGTTGGAGTTATGCTAGTTTTGAGCCTTGTTTACCTACCAGCCAAGCTTAAGAAGATGATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

98.547

100

0.985

  pptB Streptococcus salivarius strain HSISS4

93.023

100

0.93


Multiple sequence alignment