Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   GD578_RS17005 Genome accession   NZ_CP045560
Coordinates   3515791..3516426 (+) Length   211 a.a.
NCBI ID   WP_153518698.1    Uniprot ID   A0AB37CY30
Organism   Acinetobacter nosocomialis strain AC1530     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3510791..3521426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GD578_RS16990 (GD578_17205) adeT2 3511851..3512837 (-) 987 WP_025467798.1 putative multidrug efflux protein AdeT2 -
  GD578_RS16995 (GD578_17210) - 3512917..3513732 (-) 816 WP_002049691.1 NAD-dependent epimerase/dehydratase family protein -
  GD578_RS17000 (GD578_17215) recG 3513753..3515798 (+) 2046 WP_002049720.1 ATP-dependent DNA helicase RecG -
  GD578_RS17005 (GD578_17220) comF 3515791..3516426 (+) 636 WP_153518698.1 ComF family protein Machinery gene
  GD578_RS17010 (GD578_17225) - 3516429..3516830 (-) 402 WP_002049701.1 NUDIX domain-containing protein -
  GD578_RS17015 (GD578_17230) - 3516845..3517426 (-) 582 WP_002049746.1 TIGR00730 family Rossman fold protein -
  GD578_RS17020 (GD578_17235) - 3517584..3518597 (+) 1014 WP_002049699.1 CorA family divalent cation transporter -
  GD578_RS17025 (GD578_17240) - 3518671..3518958 (-) 288 WP_000250997.1 lipid asymmetry maintenance protein MlaB -
  GD578_RS17030 (GD578_17245) - 3518970..3519611 (-) 642 WP_002049753.1 phospholipid-binding protein MlaC -
  GD578_RS17035 (GD578_17250) - 3519638..3520321 (-) 684 WP_002049738.1 outer membrane lipid asymmetry maintenance protein MlaD -
  GD578_RS17040 (GD578_17255) mlaE 3520321..3521097 (-) 777 WP_001091949.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24626.82 Da        Isoelectric Point: 9.8677

>NTDB_id=395148 GD578_RS17005 WP_153518698.1 3515791..3516426(+) (comF) [Acinetobacter nosocomialis strain AC1530]
MFKLFNPQYLFQLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTVQRNDQSVLVACHYAYPINRIIQQYKYEQKLHYQTL
LAEVLQQIKFPKVQAIVPMPISKQRLTERGFNQSLLLAKLLSKQLKIPVWQPVQRLNERSQKGLSRLERFENIEQQFVAI
TQEKRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIYASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=395148 GD578_RS17005 WP_153518698.1 3515791..3516426(+) (comF) [Acinetobacter nosocomialis strain AC1530]
ATGTTTAAGTTGTTCAACCCTCAATATCTTTTTCAGTTATTGTCCCCTTGCCTATTATGTGAAATAGGAACACGGGAAAA
ATATTCACTTTGTAAAGAATGTTGGGAACAACTACCGTGGCTTAAGCAAACAGTTCAGCGCAATGATCAATCTGTTCTTG
TGGCTTGCCACTACGCATATCCAATTAACCGCATAATTCAGCAGTACAAATATGAACAAAAATTACACTATCAAACCTTA
CTTGCCGAGGTCTTACAGCAAATAAAATTTCCTAAGGTACAAGCCATAGTACCTATGCCTATTTCTAAACAACGCTTAAC
TGAACGTGGTTTTAATCAATCATTATTGCTCGCCAAACTTTTAAGTAAACAATTAAAAATACCTGTTTGGCAGCCTGTGC
AGCGCCTAAATGAACGCTCTCAAAAAGGATTGTCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGATA
ACTCAAGAAAAACGGCGTTACCGTCGTGTGCTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTAAG
TCAGGCGCTAAAACAGCTAGGGTGCACATCTATTTATGCAAGTTGCCTAGCTGCTGCTTCATCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(152-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

95.735

100

0.957
  comF Acinetobacter baumannii D1279779

94.787

100

0.948

Multiple sequence alignment