Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | GD578_RS08650 | Genome accession | NZ_CP045560 |
| Coordinates | 1770167..1770547 (+) | Length | 126 a.a. |
| NCBI ID | WP_002049794.1 | Uniprot ID | A0AB37CUR0 |
| Organism | Acinetobacter nosocomialis strain AC1530 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1765167..1775547
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GD578_RS08620 (GD578_08720) | kdsB | 1766072..1766833 (+) | 762 | WP_002050006.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| GD578_RS08625 (GD578_08725) | - | 1766845..1767825 (+) | 981 | WP_153518462.1 | DNA polymerase III subunit delta' | - |
| GD578_RS08630 (GD578_08730) | - | 1767838..1768179 (+) | 342 | WP_153518464.1 | PilZ domain-containing protein | - |
| GD578_RS08635 (GD578_08735) | - | 1768197..1768970 (+) | 774 | WP_002050255.1 | TatD family hydrolase | - |
| GD578_RS08640 (GD578_08740) | - | 1769008..1769616 (+) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| GD578_RS08645 (GD578_08745) | - | 1769626..1770177 (+) | 552 | WP_002049902.1 | type II secretion system protein | - |
| GD578_RS08650 (GD578_08750) | xcpV | 1770167..1770547 (+) | 381 | WP_002049794.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| GD578_RS08655 (GD578_08755) | xcpW | 1770547..1771362 (+) | 816 | WP_025467812.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| GD578_RS08660 (GD578_08760) | gspK | 1771362..1772321 (+) | 960 | WP_002049780.1 | type II secretion system minor pseudopilin GspK | - |
| GD578_RS08665 (GD578_08765) | - | 1772551..1773147 (+) | 597 | WP_002050068.1 | 6-carboxytetrahydropterin synthase | - |
| GD578_RS08670 (GD578_08770) | ung | 1773198..1773911 (+) | 714 | WP_002049829.1 | uracil-DNA glycosylase | - |
| GD578_RS08675 (GD578_08775) | - | 1773908..1775032 (+) | 1125 | WP_006580787.1 | enoyl-CoA hydratase/isomerase family protein | - |
| GD578_RS08680 (GD578_08780) | tadA | 1775039..1775542 (+) | 504 | WP_002050153.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13951.14 Da Isoelectric Point: 9.8004
>NTDB_id=395139 GD578_RS08650 WP_002049794.1 1770167..1770547(+) (xcpV) [Acinetobacter nosocomialis strain AC1530]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEIAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAESTVSPNVQKINVQVSLYDSDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEIAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAESTVSPNVQKINVQVSLYDSDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=395139 GD578_RS08650 WP_002049794.1 1770167..1770547(+) (xcpV) [Acinetobacter nosocomialis strain AC1530]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTAGCAGCTGTTGCTTTAACTAA
AGTGGCAATGCAGTACACTCAGTCTACTTCTAATGCCATTTTAAGAACTAAAGCTCAATTTGTAGCTATGAATGAAATTG
CTATGATGGAAATTAATCAAGAGTGGTTGCAGGGCACTCAAAGTAAGCAAGTAACTTCTCAAGGTGAGACTTGGCAGATT
GATAAATCAGCTGAATCAACTGTTAGCCCTAATGTTCAAAAAATTAATGTACAAGTTAGCTTATATGATTCGGATAAGGG
AAAAGTACAAAACGGTATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTAGCAGCTGTTGCTTTAACTAA
AGTGGCAATGCAGTACACTCAGTCTACTTCTAATGCCATTTTAAGAACTAAAGCTCAATTTGTAGCTATGAATGAAATTG
CTATGATGGAAATTAATCAAGAGTGGTTGCAGGGCACTCAAAGTAAGCAAGTAACTTCTCAAGGTGAGACTTGGCAGATT
GATAAATCAGCTGAATCAACTGTTAGCCCTAATGTTCAAAAAATTAATGTACAAGTTAGCTTATATGATTCGGATAAGGG
AAAAGTACAAAACGGTATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
95.238 |
100 |
0.952 |