Detailed information NTG0395073

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: GEV39_RS03110
• Genome accession: NZ_CP045554
• Coordinates: 676494..677360 (-)
• Length: 288 a.a.
• NCBI ID: WP_173887524.1
• Uniprot ID: -
• Organism: Pseudomonas sp. NY5710
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 671494..682360

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GEV39_RS03080 (GEV39_03155)	-	672491..673786 (-)	1296	WP_009683004.1	NAD(P)/FAD-dependent oxidoreductase	-
GEV39_RS03085 (GEV39_03160)	-	673871..674044 (-)	174	WP_033744188.1	DUF3094 family protein	-
GEV39_RS03090 (GEV39_03165)	-	674178..674807 (-)	630	WP_173887522.1	DUF1780 domain-containing protein	-
GEV39_RS03095 (GEV39_03170)	-	674940..675623 (+)	684	WP_054903879.1	energy-coupling factor ABC transporter permease	-
GEV39_RS03100 (GEV39_03175)	yacG	675674..675874 (-)	201	WP_009683001.1	DNA gyrase inhibitor YacG	-
GEV39_RS03105 (GEV39_03180)	coaE	675871..676494 (-)	624	WP_173887523.1	dephospho-CoA kinase	-
GEV39_RS03110 (GEV39_03185)	pilD	676494..677360 (-)	867	WP_173887524.1	A24 family peptidase	Machinery gene
GEV39_RS03115 (GEV39_03190)	-	677363..678571 (-)	1209	WP_173887525.1	type II secretion system F family protein	-
GEV39_RS03120 (GEV39_03195)	-	678787..679197 (+)	411	WP_173887526.1	pilin	-
GEV39_RS03130 (GEV39_03205)	-	679740..679859 (+)	120	Protein_596	Fic family protein	-
GEV39_RS03135 (GEV39_03210)	-	680345..680572 (+)	228	WP_054903892.1	hypothetical protein	-
GEV39_RS03140 (GEV39_03215)	-	681028..681492 (+)	465	WP_125854783.1	helix-turn-helix domain-containing protein	-
GEV39_RS03145 (GEV39_03220)	-	681492..682067 (+)	576	WP_173887527.1	PIN domain-containing protein	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31772.91 Da
• Isoelectric Point: 8.1500

>NTDB_id=395073 GEV39_RS03110 WP_173887524.1 676494..677360(-) (pilD) [Pseudomonas sp. NY5710]
MTLWTLLAEQPAYFYTLASVLGLLVGSFLNVLVYRLPIMLERQWQREAQQVLGLPTTQHPRFDLCLPASRCPQCGHPIRP
WQNIPVLSYLALRGRCSACKTRISPRYPLVEMASALLSLLVAWRFGASAEALLALPLTWCLLALSLIDADHQLLPDVLVL
PMLWLGLIVNAFAVYVPLGSAVWGAVAGYLSLWSVYWLFKLVTGKEGMGYGDFKLMALIGAWGGWQVLPLTLLLSSVVGA
LVGLCLLHLHRHALGAAMPFGPYLAIAGWIAVLWGDEIYASYLQLLGY

Nucleotide

• Length: 867 bp

>NTDB_id=395073 GEV39_RS03110 WP_173887524.1 676494..677360(-) (pilD) [Pseudomonas sp. NY5710]
ATGACTTTATGGACCTTGCTGGCTGAACAGCCGGCCTACTTCTACACCCTGGCGAGTGTGCTCGGCCTGCTGGTTGGCAG
CTTTCTGAATGTGCTGGTGTACCGCCTGCCAATCATGCTGGAGCGCCAATGGCAGCGGGAAGCGCAGCAGGTTCTGGGGC
TGCCGACTACGCAGCACCCGCGCTTCGACCTGTGCCTGCCTGCTTCGCGCTGCCCGCAGTGCGGACACCCGATTCGCCCG
TGGCAAAATATTCCAGTGCTCAGCTACCTGGCCTTGCGTGGGCGCTGCTCTGCCTGCAAGACCCGCATCAGCCCGCGTTA
CCCACTGGTGGAAATGGCCAGCGCGCTGCTGTCGCTGCTGGTGGCCTGGCGTTTTGGTGCGTCAGCCGAGGCATTGCTGG
CATTGCCGTTGACCTGGTGCCTGCTGGCCCTGAGCCTGATCGATGCTGATCACCAACTGCTGCCGGACGTGCTGGTGCTG
CCGATGCTGTGGCTGGGGCTGATCGTCAACGCCTTTGCCGTGTATGTGCCGCTGGGCAGTGCGGTATGGGGGGCGGTGGC
GGGTTACCTCAGCCTGTGGTCGGTGTATTGGCTGTTCAAGCTGGTCACCGGCAAGGAAGGCATGGGTTATGGCGACTTCA
AGCTGATGGCGCTGATCGGCGCCTGGGGTGGCTGGCAGGTGCTGCCGTTGACGCTGCTGTTGTCGTCGGTGGTCGGGGCG
CTGGTTGGCCTGTGCTTGTTGCATTTGCACCGGCACGCACTAGGCGCGGCGATGCCGTTTGGCCCTTATCTGGCCATTGC
GGGGTGGATTGCCGTGCTCTGGGGTGATGAAATATACGCCTCTTACCTGCAACTGCTGGGATACTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.069	96.181	0.51
pilD	Acinetobacter baumannii D1279779	51.661	94.097	0.486
pilD	Acinetobacter nosocomialis M2	50.923	94.097	0.479
pilD	Vibrio campbellii strain DS40M4	49.275	95.833	0.472
pilD	Neisseria gonorrhoeae MS11	50.943	92.014	0.469