Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   SPSINT_RS04980 Genome accession   NC_014925
Coordinates   1027701..1028588 (+) Length   295 a.a.
NCBI ID   WP_015729041.1    Uniprot ID   A0A8H9BY74
Organism   Staphylococcus pseudintermedius HKU10-03     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1022701..1033588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPSINT_RS04955 (SPSINT_0970) ylqF 1023085..1023957 (+) 873 WP_015729037.1 ribosome biogenesis GTPase YlqF -
  SPSINT_RS04960 (SPSINT_0971) - 1023950..1024735 (+) 786 WP_015729038.1 ribonuclease HII -
  SPSINT_RS04965 (SPSINT_0972) - 1024827..1025102 (+) 276 WP_015729039.1 hypothetical protein -
  SPSINT_RS04970 (SPSINT_0973) sucC 1025369..1026535 (+) 1167 WP_015729040.1 ADP-forming succinate--CoA ligase subunit beta -
  SPSINT_RS04975 (SPSINT_0974) sucD 1026557..1027462 (+) 906 WP_014614090.1 succinate--CoA ligase subunit alpha -
  SPSINT_RS04980 (SPSINT_0975) dprA 1027701..1028588 (+) 888 WP_015729041.1 DNA-processing protein DprA Machinery gene
  SPSINT_RS04985 (SPSINT_0976) topA 1028672..1030741 (+) 2070 WP_014614088.1 type I DNA topoisomerase -
  SPSINT_RS04990 (SPSINT_0977) trmFO 1030769..1032073 (+) 1305 WP_015729042.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  SPSINT_RS04995 (SPSINT_0978) xerC 1032173..1033084 (+) 912 WP_015729043.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 295 a.a.        Molecular weight: 33464.96 Da        Isoelectric Point: 8.4807

>NTDB_id=39507 SPSINT_RS04980 WP_015729041.1 1027701..1028588(+) (dprA) [Staphylococcus pseudintermedius HKU10-03]
MKQLLLLLLYAGFSTQQIQSCYPKLCALTGNLPQRIQAFKSMLSHMSQFHLQQKLIRLDMLNIHTIEATLHEHQIVPIMI
DEPLYPPLLKEIYDPPLILFCKGRLELLQHSANSLGIVGARQHTAYTPQALETLFNTFQHFPLTIISGLAHGTDALAHHY
AIRHDLSTIGVLGFGHFHHYPKNTQALRQRMEQHHLTLSEYPPYTPIAKFRFPERNRIISGLSKGILITEAKEKSGALIT
LDQALEQNRNVYVLPGDMFNVHTKGNMLRVKEGAEIVLCAQDILKDYANLNVNAL

Nucleotide


Download         Length: 888 bp        

>NTDB_id=39507 SPSINT_RS04980 WP_015729041.1 1027701..1028588(+) (dprA) [Staphylococcus pseudintermedius HKU10-03]
ATGAAACAATTACTACTATTATTACTGTACGCTGGATTTTCAACACAACAAATCCAATCCTGTTACCCTAAACTTTGTGC
TTTAACAGGAAATCTACCTCAGCGCATTCAAGCCTTCAAATCAATGCTTTCGCACATGTCGCAATTCCATTTACAACAAA
AGCTCATACGACTCGATATGCTTAATATTCATACGATTGAAGCGACGTTACATGAACATCAAATTGTCCCGATTATGATA
GACGAACCGCTTTATCCACCACTGTTAAAAGAAATTTATGATCCCCCGTTGATTTTATTTTGTAAAGGACGACTTGAACT
GCTTCAACATTCTGCTAATAGTCTTGGCATTGTAGGCGCAAGGCAACATACAGCATACACGCCACAAGCGCTTGAAACAC
TTTTTAACACATTTCAACATTTTCCACTAACGATTATTTCAGGGCTGGCACACGGTACAGACGCACTCGCACATCATTAT
GCGATTCGACATGACTTGTCCACGATCGGTGTGCTCGGTTTTGGGCATTTTCATCATTATCCTAAAAACACACAAGCATT
ACGCCAGAGGATGGAACAACATCATTTGACTCTAAGCGAATATCCACCTTACACGCCTATTGCTAAATTTAGATTTCCTG
AACGCAATCGCATTATTAGTGGTTTGTCGAAAGGAATACTTATCACTGAAGCAAAAGAAAAAAGTGGCGCGCTCATTACG
TTGGATCAGGCATTAGAACAAAATCGTAATGTTTATGTACTGCCGGGGGATATGTTCAACGTGCATACGAAAGGTAATAT
GCTACGTGTCAAAGAGGGAGCAGAAATTGTATTATGTGCCCAGGATATATTGAAAGATTATGCAAATTTAAATGTTAACG
CTTTGTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

50.69

98.305

0.498
  dprA Staphylococcus aureus N315

50.345

98.305

0.495

Multiple sequence alignment