Detailed information NTG0395049

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: GEV38_RS03620
• Genome accession: NZ_CP045553
• Coordinates: 785518..786384 (-)
• Length: 288 a.a.
• NCBI ID: WP_054572236.1
• Uniprot ID: A0AAJ5I9S5
• Organism: Pseudomonas sp. 13159349
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 780518..791384

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GEV38_RS03585 (GEV38_03740)	-	780732..782027 (-)	1296	WP_003260618.1	NAD(P)/FAD-dependent oxidoreductase	-
GEV38_RS03590 (GEV38_03745)	-	782112..782285 (-)	174	WP_013970765.1	DUF3094 family protein	-
GEV38_RS03595 (GEV38_03750)	-	782419..783048 (-)	630	WP_013970766.1	DUF1780 domain-containing protein	-
GEV38_RS03600 (GEV38_03755)	-	783104..783535 (-)	432	WP_054573229.1	hypothetical protein	-
GEV38_RS03605 (GEV38_03760)	-	783622..784329 (+)	708	WP_043935298.1	energy-coupling factor ABC transporter permease	-
GEV38_RS03610 (GEV38_03765)	yacG	784698..784898 (-)	201	WP_003260624.1	DNA gyrase inhibitor YacG	-
GEV38_RS03615 (GEV38_03770)	coaE	784895..785518 (-)	624	WP_013970769.1	dephospho-CoA kinase	-
GEV38_RS03620 (GEV38_03775)	pilD	785518..786384 (-)	867	WP_054572236.1	A24 family peptidase	Machinery gene
GEV38_RS03625 (GEV38_03780)	-	786387..787595 (-)	1209	WP_054572237.1	type II secretion system F family protein	-
GEV38_RS03630 (GEV38_03785)	-	787811..788221 (+)	411	WP_054572238.1	pilin	-
GEV38_RS03640 (GEV38_03795)	-	788534..789718 (+)	1185	WP_099593723.1	tyrosine-type recombinase/integrase	-
GEV38_RS03645 (GEV38_03800)	-	789748..790497 (+)	750	WP_157765891.1	hypothetical protein	-
GEV38_RS03650 (GEV38_03805)	-	790613..790816 (+)	204	WP_099593719.1	AlpA family transcriptional regulator	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 32045.24 Da
• Isoelectric Point: 7.9596

>NTDB_id=395049 GEV38_RS03620 WP_054572236.1 785518..786384(-) (pilD) [Pseudomonas sp. 13159349]
MTLWTLLAEQPAYFLTLATVLGLLVGSFLNVLVYRLPIMLERQWQREAQEMLELPITPHERFDLWLPASRCPHCAHRIRA
WENIPVISYLALRGRCSACKTRISPRYPLVEVASALLSLVVAWRFGVSPEALLALPLTWCLLALSLIDAEHQLLPDALVL
PMLWLGLIVNAFGLYIPLTSALWGAVAGYLSLWSVYWVFKLVTGKEGMGYGDFKLMALIGAWGGWQVLPLTLLLSSVVGA
LAGLCLLRLRRHAMGTAIPFGPYLAIAGWIAVLWGDEIYASYTNLLGF

Nucleotide

• Length: 867 bp

>NTDB_id=395049 GEV38_RS03620 WP_054572236.1 785518..786384(-) (pilD) [Pseudomonas sp. 13159349]
ATGACTTTATGGACTTTGCTGGCTGAGCAGCCGGCGTACTTTCTCACCCTGGCCACGGTGCTCGGCCTGCTGGTGGGCAG
TTTTCTCAACGTGCTGGTGTATCGCCTGCCGATCATGCTGGAGCGGCAATGGCAGCGTGAGGCGCAGGAAATGCTGGAAT
TGCCGATCACGCCGCACGAGCGTTTCGACCTGTGGCTACCCGCCTCGCGCTGCCCGCATTGTGCGCATCGGATTCGCGCA
TGGGAGAACATTCCGGTCATCAGCTACCTGGCCTTGCGCGGGCGTTGTTCAGCCTGCAAAACCCGCATCAGCCCGCGCTA
CCCGTTGGTGGAGGTGGCCAGCGCGCTGCTGTCGCTAGTGGTGGCCTGGCGCTTTGGTGTTTCGCCCGAGGCCTTGCTGG
CGCTGCCGCTGACCTGGTGCCTGCTGGCCCTGAGCCTGATCGATGCCGAGCACCAGTTGCTGCCGGATGCGCTGGTGCTG
CCGATGCTGTGGCTGGGGCTGATCGTCAATGCCTTCGGCCTCTACATTCCGCTGACCAGCGCACTGTGGGGTGCGGTGGC
CGGGTACCTCAGCCTGTGGTCGGTGTACTGGGTATTCAAGCTGGTTACCGGCAAGGAGGGCATGGGCTATGGCGACTTCA
AGCTGATGGCGCTGATCGGGGCCTGGGGTGGCTGGCAGGTGTTGCCGTTGACCCTGCTGTTGTCGTCGGTGGTCGGGGCG
CTGGCTGGGCTGTGCCTGTTGCGCTTGCGCCGCCATGCCATGGGCACCGCGATCCCGTTTGGCCCCTATCTGGCGATTGC
GGGGTGGATTGCCGTGCTCTGGGGTGATGAAATATACGCCTCATACACAAACCTGCTTGGATTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

• Type IV leader peptidase family (Peptidase_A24) (137-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.545	95.486	0.521
pilD	Acinetobacter baumannii D1279779	52.143	97.222	0.507
pilD	Acinetobacter nosocomialis M2	51.429	97.222	0.5
pilD	Vibrio campbellii strain DS40M4	50.178	97.569	0.49
pilD	Neisseria gonorrhoeae MS11	50.943	92.014	0.469