Detailed information NTG0394984

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: GAY96_RS12440
• Genome accession: NZ_CP045550
• Coordinates: 2652154..2653374 (-)
• Length: 406 a.a.
• NCBI ID: WP_265573726.1
• Uniprot ID: -
• Organism: Venatoribacter cucullus strain ASxS5
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2647154..2658374

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GAY96_RS12420 (GAY96_12355)	-	2647389..2649281 (+)	1893	WP_265573724.1	M48 family metallopeptidase	-
GAY96_RS12425 (GAY96_12360)	rpoH	2649473..2650342 (-)	870	WP_228345322.1	RNA polymerase sigma factor RpoH	-
GAY96_RS12430 (GAY96_12365)	ftsX	2650482..2651462 (-)	981	WP_265573725.1	permease-like cell division protein FtsX	-
GAY96_RS12435 (GAY96_12370)	ftsE	2651452..2652135 (-)	684	WP_420907167.1	cell division ATP-binding protein FtsE	-
GAY96_RS12440 (GAY96_12375)	pilA	2652154..2653374 (-)	1221	WP_265573726.1	signal recognition particle-docking protein FtsY	Machinery gene
GAY96_RS12445 (GAY96_12380)	-	2653517..2654287 (+)	771	WP_265573727.1	hypothetical protein	-
GAY96_RS12450 (GAY96_12385)	rsmD	2654298..2654852 (+)	555	WP_265573728.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
GAY96_RS12455	-	2654916..2655245 (-)	330	Protein_2421	DUF3080 family protein	-
GAY96_RS12460 (GAY96_12395)	-	2655226..2655909 (-)	684	WP_265573729.1	TetR/AcrR family transcriptional regulator	-
GAY96_RS12465 (GAY96_12400)	-	2656085..2657533 (+)	1449	WP_265573730.1	coniferyl aldehyde dehydrogenase	-
GAY96_RS12470 (GAY96_12405)	-	2657578..2658090 (+)	513	WP_265573731.1	hypothetical protein	-

Sequence

Protein

• Length: 406 a.a.
• Molecular weight: 43601.52 Da
• Isoelectric Point: 5.0138

>NTDB_id=394984 GAY96_RS12440 WP_265573726.1 2652154..2653374(-) (pilA) [Venatoribacter cucullus strain ASxS5]
MFDFFKRKKAAAAEADPKQPETAPAETESGQSATDTGTATAETTEAAVANQVNTEDRAEYKVTPVAAPEPAASPEPVDAP
AHLTEQPQDKPLDNQKKPGFFSRIRAGLSKTRHGFTDGVANLLLGKKEIDDDLLEELETQLIMADVGVETTRAIMARLTA
RVGRKELKDSGALYNALIAELQETLEKVQAPLDINAGHKPYVILMVGINGVGKTTTIGKLAKQFQLAGKSVMLAAGDTFR
AAAVEQLQVWGERNNVPVIAQHTGADSASVLFDALQAAQARKVDILIADTAGRLHTKDNLMQELEKVVRVMKKLDPTAPH
EVMLVLDAGTGQNAINQAKQFREAVGVTGLTLTKLDGTAKGGIIFALAQQFELPVRYIGVGEGIDDLRPFNAEEFTKALF
QQEQAG

Nucleotide

• Length: 1221 bp

>NTDB_id=394984 GAY96_RS12440 WP_265573726.1 2652154..2653374(-) (pilA) [Venatoribacter cucullus strain ASxS5]
ATGTTTGATTTTTTTAAACGCAAAAAAGCGGCCGCCGCAGAAGCAGACCCCAAGCAACCTGAAACGGCGCCGGCAGAGAC
GGAATCCGGCCAGTCTGCTACCGATACCGGGACGGCAACCGCCGAGACCACAGAGGCTGCGGTCGCCAATCAGGTAAACA
CCGAAGATCGTGCCGAATATAAGGTTACCCCGGTAGCCGCCCCCGAACCTGCCGCCAGTCCCGAGCCGGTTGACGCACCG
GCACATCTGACCGAACAGCCGCAGGACAAGCCGCTGGATAACCAGAAGAAGCCTGGCTTTTTCAGCCGTATCCGCGCCGG
GTTAAGCAAAACCCGCCACGGCTTTACCGATGGGGTGGCCAATCTGCTGCTGGGCAAAAAAGAAATTGATGACGATCTGC
TGGAAGAGCTGGAAACCCAGCTGATTATGGCGGACGTTGGCGTGGAAACCACCCGCGCCATCATGGCCCGGTTAACCGCC
CGGGTTGGCCGCAAAGAGCTGAAGGATTCCGGCGCGCTGTACAACGCTTTAATTGCTGAACTGCAGGAAACCCTCGAAAA
AGTACAGGCGCCGCTGGACATTAACGCCGGCCACAAACCCTATGTGATTCTGATGGTCGGTATTAATGGCGTGGGCAAAA
CCACCACCATCGGCAAGCTGGCCAAACAATTTCAGCTGGCCGGTAAAAGCGTGATGCTGGCTGCCGGCGATACCTTCCGG
GCCGCCGCGGTTGAGCAGCTGCAGGTGTGGGGCGAGCGCAACAACGTGCCGGTGATTGCCCAGCACACCGGTGCTGACTC
TGCCTCGGTGCTGTTCGATGCGCTGCAAGCGGCGCAGGCGCGTAAGGTCGATATACTGATTGCCGACACCGCCGGCCGTC
TGCACACCAAAGACAACCTGATGCAGGAACTGGAAAAAGTGGTGCGGGTGATGAAAAAACTCGACCCGACCGCCCCGCAT
GAAGTGATGCTGGTACTGGATGCCGGTACCGGTCAGAACGCCATTAATCAGGCCAAACAATTCCGCGAAGCGGTTGGCGT
TACCGGCTTAACCCTGACCAAACTCGATGGCACCGCCAAAGGCGGGATCATCTTTGCACTGGCGCAGCAGTTTGAACTGC
CGGTGCGTTACATCGGCGTCGGCGAAGGTATTGATGACCTGCGCCCGTTCAACGCTGAAGAATTCACCAAAGCCCTGTTC
CAGCAGGAACAGGCCGGCTAA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (201-400)

• SRP54-type protein, helical bundle domain (SRP54_N) (118-181)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	47.368	100	0.488