NTDB

Overview

Name	recF	Type	Machinery gene
Locus tag	GE021_RS10995	Genome accession	NZ_CP053792
Coordinates	2245675..2246778 (+)	Length	367 a.a.
NCBI ID	WP_125074646.1	Uniprot ID	A0A3P5Y7S9
Organism	Streptococcus canis strain HL_77_1
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2240675..2251778

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GE021_RS10970 (GE021_010960)	pgsA	2240775..2241317 (-)	543	WP_003045841.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
GE021_RS10975 (GE021_010965)	-	2241331..2242359 (-)	1029	WP_125074477.1	helix-turn-helix domain-containing protein	-
GE021_RS10980 (GE021_010970)	-	2242409..2243692 (-)	1284	WP_125074478.1	pitrilysin family protein	-
GE021_RS10985 (GE021_010975)	-	2243694..2244938 (-)	1245	WP_164407191.1	pitrilysin family protein	-
GE021_RS10990 (GE021_010980)	yaaA	2245260..2245673 (+)	414	WP_125074645.1	S4 domain-containing protein YaaA	-
GE021_RS10995 (GE021_010985)	recF	2245675..2246778 (+)	1104	WP_125074646.1	DNA replication/repair protein RecF	Machinery gene
GE021_RS11000 (GE021_010990)	-	2246890..2247753 (-)	864	WP_003045857.1	GRP family sugar transporter	-
GE021_RS11005 (GE021_010995)	guaB	2247965..2249446 (-)	1482	WP_125074647.1	IMP dehydrogenase	-
GE021_RS11010 (GE021_011000)	trpS	2249822..2250844 (-)	1023	WP_164407203.1	tryptophan--tRNA ligase	-

Sequence

Protein

Download Length: 367 a.a. Molecular weight: 42026.86 Da Isoelectric Point: 7.7440

                                >NTDB_id=394669 GE021_RS10995 WP_125074646.1 2245675..2246778(+) (recF) [Streptococcus canis strain HL_77_1]

MWIKELQLKHYRNYNQLSAEFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRTDKELIHFDQSSVSLSGKISRISGT

VDLEINLSDKGRVTKINSLKQAKLSDYIGTMMVVLFAPEDLQLVKGAPSLRRKFIDVDLGQIKPIYLSDLTHYNHVLKQR

NTYLKSAQHIDADFLAVLDEQLADYGSRVMEHRSDFINALEKEANRHHQAISNDLENLSLAYDSSVPFENKEEIYQQFLQ

LLKKNHQKDSFRKTTSVGPHRDDLAFYINDMNANFASQGQHRSLILSLKMAEVSLMKDLTGDNPILLLDDVMSELDNTRQ

TKLLETVMKENVQTFITTTSLDHLSQLPKNIRIFQVTKGTIRVDSKM

Nucleotide

Download Length: 1104 bp

                                >NTDB_id=394669 GE021_RS10995 WP_125074646.1 2245675..2246778(+) (recF) [Streptococcus canis strain HL_77_1]

ATGTGGATCAAAGAATTACAACTGAAACATTATCGTAATTACAACCAGCTTTCTGCCGAATTTTCTTCTGGTTTAAATGT

CTTTATTGGTAATAATGCTCAAGGAAAAACCAATTTTCTGGAAGCCATCTATTTTTTATCGCTCACAAGAAGCCATCGAA

CGAGGACTGATAAAGAATTAATCCATTTTGACCAGTCAAGTGTCTCCCTTTCTGGTAAGATTAGCCGCATTAGTGGTACT

GTTGATTTGGAAATTAACCTTTCAGACAAAGGACGTGTGACAAAAATCAATTCCTTAAAGCAAGCGAAATTGTCTGACTA

CATTGGAACCATGATGGTTGTGCTTTTTGCACCAGAAGATTTACAACTGGTCAAAGGAGCTCCTAGTCTGCGCCGCAAAT

TCATTGACGTTGATTTGGGACAAATCAAGCCTATTTATTTATCAGATTTGACACATTACAATCATGTACTGAAGCAACGT

AACACTTATTTAAAGAGTGCCCAACATATTGACGCAGATTTTCTAGCTGTTTTAGATGAACAATTAGCTGATTATGGCAG

CCGAGTAATGGAACATCGCAGTGATTTTATCAATGCCCTAGAAAAAGAGGCTAATAGGCACCATCAAGCCATCTCAAACG

ATTTAGAAAACCTTTCACTTGCTTATGACTCCTCAGTTCCTTTTGAAAACAAAGAGGAAATTTACCAGCAATTCTTACAG

CTACTTAAAAAAAATCATCAGAAAGATTCCTTCCGTAAAACTACCAGTGTGGGCCCACATCGAGATGATCTGGCTTTTTA

CATTAATGATATGAATGCTAATTTTGCAAGCCAAGGACAACACCGTAGCCTTATACTCTCTTTAAAAATGGCTGAAGTCA

GTTTAATGAAAGACTTGACAGGAGATAATCCTATCCTTTTATTGGATGATGTCATGAGTGAGTTAGACAATACACGGCAA

ACAAAGCTACTTGAAACAGTGATGAAAGAAAATGTCCAAACTTTTATCACAACAACAAGCTTGGATCATCTATCACAATT

ACCAAAAAATATCCGTATTTTTCAGGTGACAAAAGGAACCATTCGAGTTGATTCCAAAATGTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-360)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A3P5Y7S9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
recF	Streptococcus pneumoniae R6	63.014	99.455	0.627
recF	Bacillus subtilis subsp. subtilis str. 168	42.276	100	0.425

Detailed information NTG0394669