Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   GE021_RS07155 Genome accession   NZ_CP053792
Coordinates   1438050..1438646 (-) Length   198 a.a.
NCBI ID   WP_125074631.1    Uniprot ID   A0A3P5YB68
Organism   Streptococcus canis strain HL_77_1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1433050..1443646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE021_RS07140 (GE021_007140) - 1434469..1435164 (-) 696 WP_125074628.1 TIGR02206 family membrane protein -
  GE021_RS07145 (GE021_007145) murF 1435250..1436635 (-) 1386 WP_125074629.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  GE021_RS07150 (GE021_007150) - 1436834..1437880 (-) 1047 WP_125074630.1 D-alanine--D-alanine ligase -
  GE021_RS07155 (GE021_007155) recR 1438050..1438646 (-) 597 WP_125074631.1 recombination mediator RecR Machinery gene
  GE021_RS07160 (GE021_007160) pbp2b 1438658..1440721 (-) 2064 WP_164407404.1 penicillin-binding protein PBP2B -
  GE021_RS07165 (GE021_007165) - 1440825..1441595 (-) 771 WP_125074633.1 formate/nitrite transporter family protein -
  GE021_RS07170 (GE021_007170) - 1441728..1442270 (-) 543 WP_125074634.1 hypothetical protein -
  GE021_RS07175 (GE021_007175) - 1442386..1442907 (-) 522 WP_125074635.1 transcription repressor NadR -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21715.87 Da        Isoelectric Point: 5.0690

>NTDB_id=394632 GE021_RS07155 WP_125074631.1 1438050..1438646(-) (recR) [Streptococcus canis strain HL_77_1]
MLYPTPIAKLIESYSKLPGIGVKTATRLAFYTIGMSNEDVNDFAKNLLAAKRELTYCSTCGNLTDDDPCHICTDTSRDQT
TILVVEDAKDVSAMEKIQEYHGYYHVLHGLISPMNGVGPDDINLKRLITRLMDGKVTEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=394632 GE021_RS07155 WP_125074631.1 1438050..1438646(-) (recR) [Streptococcus canis strain HL_77_1]
GTGCTTTACCCAACCCCTATTGCAAAATTAATTGAAAGTTATTCCAAACTCCCAGGAATCGGGGTTAAAACGGCAACCAG
ACTTGCCTTTTACACGATTGGAATGTCTAATGAAGACGTTAATGATTTTGCTAAAAATTTATTGGCCGCTAAGAGAGAAC
TGACCTATTGTTCGACTTGCGGAAACCTTACCGATGACGATCCTTGTCACATTTGCACAGACACGAGCCGTGATCAGACG
ACCATTCTGGTAGTAGAAGATGCTAAAGATGTTTCTGCCATGGAAAAAATCCAAGAGTATCATGGCTATTATCATGTGCT
TCACGGCTTAATTTCGCCCATGAATGGTGTGGGGCCAGATGACATCAATCTTAAACGTTTAATTACCCGTTTAATGGATG
GTAAGGTGACCGAAGTTATCGTAGCTACCAATGCTACAGCTGATGGGGAGGCAACGTCCATGTATATCTCACGGGTCTTG
AAGCCAGCAGGAATCAAGGTAACCCGCTTAGCAAGAGGTCTCGCTGTTGGCTCAGATATTGAGTATGCTGATGAAGTGAC
CCTACTAAGAGCTATTGAAAATCGGACAGAGCTTTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-171)

RecR protein (RecR_ZnF)

(39-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3P5YB68

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

86.364

100

0.864
  recR Bacillus subtilis subsp. subtilis str. 168

64.141

100

0.641
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50.256

98.485

0.495