Detailed information NTG0394610

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: GET80_RS02195
• Genome accession: NZ_CP045502
• Coordinates: 470162..471034 (-)
• Length: 290 a.a.
• NCBI ID: WP_206818893.1
• Uniprot ID: -
• Organism: Aeromonas hydrophila strain Aer_Brac14A
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 465162..476034

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GET80_RS02170 (GET80_02195)	-	466898..468082 (+)	1185	WP_206818896.1	tetratricopeptide repeat protein	-
GET80_RS02175 (GET80_02200)	mutT	468091..468504 (+)	414	WP_016352173.1	8-oxo-dGTP diphosphatase MutT	-
GET80_RS02180 (GET80_02205)	yacG	468565..468759 (-)	195	WP_005305661.1	DNA gyrase inhibitor YacG	-
GET80_RS02185 (GET80_02210)	zapD	468769..469491 (-)	723	WP_206818895.1	cell division protein ZapD	-
GET80_RS02190 (GET80_02215)	coaE	469529..470143 (-)	615	WP_206818894.1	dephospho-CoA kinase	-
GET80_RS02195 (GET80_02220)	pilD	470162..471034 (-)	873	WP_206818893.1	A24 family peptidase	Machinery gene
GET80_RS02200 (GET80_02225)	pilC	471057..472298 (-)	1242	WP_206818892.1	type II secretion system F family protein	Machinery gene
GET80_RS02205 (GET80_02230)	pilB	472414..474120 (-)	1707	WP_029302067.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
GET80_RS02210 (GET80_02235)	tapA	474127..474543 (-)	417	WP_042066959.1	type IVa pilus major pilin TapA	-
GET80_RS02215 (GET80_02245)	nadC	474866..475723 (-)	858	WP_206818891.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32522.86 Da
• Isoelectric Point: 6.7408

>NTDB_id=394610 GET80_RS02195 WP_206818893.1 470162..471034(-) (pilD) [Aeromonas hydrophila strain Aer_Brac14A]
MLLITDVFHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYLGYFNPETQPQQEDRYNLMVPRSACPHCGHA
ITAMENIPLLSWLWLKGRCRECQAPISARYPLVELLTALLSLVVAATFPPGWALLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLAGGFIPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL
VGAFIGIGLILLRNHHQNKPIPFGPYLAIAGWIALLWGDTITRWYLTTFL

Nucleotide

• Length: 873 bp

>NTDB_id=394610 GET80_RS02195 WP_206818893.1 470162..471034(-) (pilD) [Aeromonas hydrophila strain Aer_Brac14A]
ATGTTGCTGATCACTGACGTTTTTCACAGCCTGCCATGGCTCTATTTCTCGCTGGTATTCCTCTTTTCTCTGATGATCGG
CAGTTTTCTCAACGTGGTCATCCATCGCCTGCCCATCATGCTGGAGCGGGAGTGGCAGGCCGAATATCTCGGCTATTTCA
ATCCGGAAACACAGCCGCAGCAGGAAGATCGCTACAACCTGATGGTGCCGCGTTCAGCCTGCCCTCATTGCGGCCACGCC
ATCACGGCCATGGAGAACATCCCCCTGCTCAGCTGGCTCTGGCTCAAGGGACGCTGCCGTGAATGCCAGGCACCCATATC
GGCCCGTTATCCTCTGGTGGAATTGCTGACGGCCCTGCTCTCGCTGGTCGTCGCAGCAACATTCCCACCGGGCTGGGCTT
TGCTGGCCGCCCTGCTGCTCACCTGGGTACTGGTGGCGCTTACTTTCATCGATCTGGACAAAATGCTGCTGCCGGACCAG
CTGACCCTGCCACTGTTGTGGGGCGGCCTGCTGTTCAACCTGGCAGGGGGATTTATACCGCTGGCCGATGCGGTGATCGG
CGCCATGGCCGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTGACCGGCAAGGAAGGGATGGGGTATG
GCGACTTCAAGCTGCTGGCGGCGCTGGGCGCCTGGCTCGGCTGGCAGGCACTGCCCATCGTGTTGCTGCTCTCGTCGCTG
GTTGGCGCTTTCATCGGGATTGGCCTCATTCTGCTGCGCAACCATCATCAGAACAAACCCATCCCCTTCGGCCCCTACTT
GGCCATCGCCGGCTGGATCGCGCTGCTGTGGGGCGATACCATCACCCGCTGGTACCTCACGACGTTTCTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

• Type IV leader peptidase family (Peptidase_A24) (139-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	61.189	98.621	0.603
pilD	Vibrio campbellii strain DS40M4	55.594	98.621	0.548
pilD	Acinetobacter baumannii D1279779	53.873	97.931	0.528
pilD	Acinetobacter nosocomialis M2	53.873	97.931	0.528
pilD	Neisseria gonorrhoeae MS11	48.718	94.138	0.459