Detailed information NTG0394564

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: GE022_RS10435
• Genome accession: NZ_CP053790
• Coordinates: 2145255..2146358 (-)
• Length: 367 a.a.
• NCBI ID: WP_164405496.1
• Uniprot ID: -
• Organism: Streptococcus canis strain HL_77_2
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2140255..2151358

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GE022_RS10415 (GE022_010405)	trpS	2140494..2141516 (+)	1023	WP_003045853.1	tryptophan--tRNA ligase	-
GE022_RS10420 (GE022_010410)	guaB	2141891..2143372 (+)	1482	WP_164228179.1	IMP dehydrogenase	-
GE022_RS10425 (GE022_010415)	-	2143535..2144398 (+)	864	WP_164405653.1	GRP family sugar transporter	-
GE022_RS10430 (GE022_010420)	tnpA	2144599..2145052 (+)	454	Protein_2016	IS200/IS605 family transposase	-
GE022_RS10435 (GE022_010425)	recF	2145255..2146358 (-)	1104	WP_164405496.1	DNA replication/repair protein RecF	Machinery gene
GE022_RS10440 (GE022_010430)	yaaA	2146360..2146773 (-)	414	WP_164228187.1	S4 domain-containing protein YaaA	-
GE022_RS10445 (GE022_010435)	-	2146847..2147802 (-)	956	Protein_2019	IS30 family transposase	-
GE022_RS10450 (GE022_010440)	-	2148061..2148795 (-)	735	WP_420853600.1	DDE-type integrase/transposase/recombinase	-
GE022_RS10460 (GE022_010450)	rlmH	2149115..2149594 (-)	480	WP_003045866.1	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	-
GE022_RS10465 (GE022_010455)	htrA	2149807..2151030 (+)	1224	WP_164228720.1	S1C family serine protease	Regulator

Sequence

Protein

• Length: 367 a.a.
• Molecular weight: 41965.91 Da
• Isoelectric Point: 9.2281

>NTDB_id=394564 GE022_RS10435 WP_164405496.1 2145255..2146358(-) (recF) [Streptococcus canis strain HL_77_2]
MWIKELQLKHYRNYNQLSAEFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRTDKELIHFDQSSVSLSGKISRISGT
VDLEINLSDKGRVTKINSLKQAKLSDYIGTMMVVLFAPEDLQLVKGAPSLRRKFIDVDLGQIKPIYLSDLTHYNHVLKQR
NTYLKSAQHIDADFLAVLDEQLADYGSRVMEHRSDFINALEKEANRHHQAISNDLENLSLAYDSSVPFENKGEIYQQFLQ
LLKKNHQKDSFRKTTSVGPHRDDLAFYINDMNANFASQGQHRSLILSLKMAEVSLMKDLTGDNPILLLDDVMSELDNTRQ
TKLLKTVMKENVQTFITTTSLDHLSQLPKNIRIFQVIKGTIRVDSKM

Nucleotide

• Length: 1104 bp

>NTDB_id=394564 GE022_RS10435 WP_164405496.1 2145255..2146358(-) (recF) [Streptococcus canis strain HL_77_2]
ATGTGGATCAAAGAATTACAACTAAAACATTATCGTAATTACAACCAGCTTTCTGCCGAATTTTCTTCTGGTTTAAATGT
CTTTATTGGTAATAATGCTCAAGGAAAAACCAATTTTCTGGAAGCCATCTATTTTTTATCGCTCACAAGAAGCCATCGAA
CGAGGACTGATAAAGAATTAATCCACTTTGACCAGTCAAGTGTCTCCCTTTCTGGTAAGATTAGCCGCATTAGTGGTACT
GTTGATTTGGAAATTAACCTTTCAGACAAAGGACGTGTGACAAAAATCAATTCCTTAAAGCAAGCGAAATTGTCTGACTA
CATTGGAACCATGATGGTTGTGCTCTTTGCACCAGAAGATTTACAACTGGTCAAAGGAGCTCCTAGTCTGCGCCGCAAAT
TCATTGACGTTGATTTGGGACAAATCAAGCCTATTTATTTATCAGATTTGACACATTACAATCATGTACTGAAGCAACGT
AACACTTATTTAAAGAGTGCCCAACATATTGACGCAGATTTTCTAGCTGTTTTAGATGAACAATTAGCTGATTATGGCAG
CCGAGTAATGGAACATCGCAGTGATTTTATCAATGCCCTAGAAAAAGAGGCTAATAGGCACCATCAAGCCATCTCAAACG
ATTTAGAAAACCTTTCACTTGCTTATGACTCCTCAGTTCCTTTTGAAAACAAAGGGGAAATTTACCAGCAATTCTTACAG
CTACTTAAAAAAAATCATCAGAAAGATTCCTTCCGTAAAACTACCAGTGTGGGCCCACATCGAGATGATCTGGCTTTTTA
CATTAATGATATGAATGCTAATTTTGCAAGCCAAGGACAACACCGTAGCCTTATACTCTCTTTAAAAATGGCTGAAGTCA
GTTTAATGAAAGACTTGACAGGAGATAATCCTATCCTTTTATTGGATGATGTCATGAGTGAGTTAGACAATACACGGCAA
ACAAAGCTACTTAAAACAGTGATGAAAGAAAATGTCCAAACTTTTATCACAACAACAAGCTTGGATCATCTATCACAATT
ACCAAAAAATATCCGTATTTTTCAGGTGATAAAAGGAACTATTCGAGTTGATTCCAAAATGTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-360)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	62.74	99.455	0.624
recF	Bacillus subtilis subsp. subtilis str. 168	43.28	100	0.439