Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   GE022_RS09435 Genome accession   NZ_CP053790
Coordinates   1942487..1942936 (-) Length   149 a.a.
NCBI ID   WP_003045511.1    Uniprot ID   A0A2D4DR43
Organism   Streptococcus canis strain HL_77_2     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1937487..1947936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE022_RS09415 (GE022_009405) - 1937565..1938011 (-) 447 WP_003045504.1 dUTP diphosphatase -
  GE022_RS09420 (GE022_009410) - 1938117..1938884 (-) 768 WP_164228111.1 epoxyqueuosine reductase QueH -
  GE022_RS09425 (GE022_009415) - 1939001..1940785 (-) 1785 WP_159304746.1 ABC transporter ATP-binding protein -
  GE022_RS09430 (GE022_009420) rcrP 1940785..1942494 (-) 1710 WP_164405445.1 ABC transporter ATP-binding protein Regulator
  GE022_RS09435 (GE022_009425) rcrR 1942487..1942936 (-) 450 WP_003045511.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  GE022_RS09440 (GE022_009430) - 1943236..1944252 (+) 1017 WP_125074694.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  GE022_RS09445 (GE022_009435) galU 1944284..1945189 (+) 906 WP_003045515.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  GE022_RS09450 (GE022_009440) - 1945452..1946123 (-) 672 WP_093999355.1 rhomboid family intramembrane serine protease -
  GE022_RS09455 (GE022_009445) - 1946120..1946647 (-) 528 WP_039994714.1 5-formyltetrahydrofolate cyclo-ligase -
  GE022_RS11045 (GE022_009450) - 1947153..1947302 (-) 150 WP_081587247.1 LPXTG cell wall anchor domain-containing protein -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 17385.19 Da        Isoelectric Point: 9.6257

>NTDB_id=394557 GE022_RS09435 WP_003045511.1 1942487..1942936(-) (rcrR) [Streptococcus canis strain HL_77_2]
MSRVIADLRELTHQIEQISDEIARKYNLEHLAGPQGHVLVFLSKHQDQEIFVKDIEKELQISKSVTSNLVKRMVKNGFIQ
VLPSQADKRYKQIVLAQAGKDKLPLLQECRKDIEHYFFKEITREELLTVKKVIQQLKQNMLTYKGENNA

Nucleotide


Download         Length: 450 bp        

>NTDB_id=394557 GE022_RS09435 WP_003045511.1 1942487..1942936(-) (rcrR) [Streptococcus canis strain HL_77_2]
ATGTCACGAGTAATTGCAGATTTGCGCGAATTAACGCATCAGATTGAGCAAATTAGCGATGAAATTGCTAGGAAATACAA
TTTGGAACATTTAGCAGGTCCTCAGGGACATGTGTTGGTTTTTCTATCCAAACATCAAGATCAGGAAATCTTTGTCAAGG
ATATTGAAAAAGAACTGCAGATTTCAAAATCGGTCACTAGCAATTTAGTCAAGCGCATGGTCAAAAATGGCTTTATCCAA
GTACTTCCCTCGCAGGCTGACAAACGCTATAAACAAATTGTTTTGGCTCAGGCGGGTAAGGATAAATTACCCTTGCTTCA
AGAATGTCGTAAGGATATTGAACATTATTTTTTTAAGGAAATTACGAGAGAAGAGTTGTTGACAGTCAAAAAGGTGATTC
AGCAGCTCAAGCAAAATATGCTAACTTACAAAGGAGAGAACAATGCTTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2D4DR43

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

45.714

93.96

0.43