Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   GE022_RS09430 Genome accession   NZ_CP053790
Coordinates   1940785..1942494 (-) Length   569 a.a.
NCBI ID   WP_164405445.1    Uniprot ID   -
Organism   Streptococcus canis strain HL_77_2     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1935785..1947494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE022_RS09410 (GE022_009400) radA 1936106..1937467 (-) 1362 WP_159304767.1 DNA repair protein RadA Machinery gene
  GE022_RS09415 (GE022_009405) - 1937565..1938011 (-) 447 WP_003045504.1 dUTP diphosphatase -
  GE022_RS09420 (GE022_009410) - 1938117..1938884 (-) 768 WP_164228111.1 epoxyqueuosine reductase QueH -
  GE022_RS09425 (GE022_009415) - 1939001..1940785 (-) 1785 WP_159304746.1 ABC transporter ATP-binding protein -
  GE022_RS09430 (GE022_009420) rcrP 1940785..1942494 (-) 1710 WP_164405445.1 ABC transporter ATP-binding protein Regulator
  GE022_RS09435 (GE022_009425) rcrR 1942487..1942936 (-) 450 WP_003045511.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  GE022_RS09440 (GE022_009430) - 1943236..1944252 (+) 1017 WP_125074694.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  GE022_RS09445 (GE022_009435) galU 1944284..1945189 (+) 906 WP_003045515.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  GE022_RS09450 (GE022_009440) - 1945452..1946123 (-) 672 WP_093999355.1 rhomboid family intramembrane serine protease -
  GE022_RS09455 (GE022_009445) - 1946120..1946647 (-) 528 WP_039994714.1 5-formyltetrahydrofolate cyclo-ligase -
  GE022_RS11045 (GE022_009450) - 1947153..1947302 (-) 150 WP_081587247.1 LPXTG cell wall anchor domain-containing protein -

Sequence

Protein


Download         Length: 569 a.a.        Molecular weight: 63148.84 Da        Isoelectric Point: 5.9468

>NTDB_id=394556 GE022_RS09430 WP_164405445.1 1940785..1942494(-) (rcrP) [Streptococcus canis strain HL_77_2]
MLKEAILRYKWYVLGSLLMIIGVVASSLLQPHYLKDVLSAVIQNNQDKIYDVGRLLLIIALVGLVSGTLNTVLSAKIAQG
VSADIREKTFRKIQSFSYANVEAFNAGNLVVRMTNDITQIQNLVMMLFQVLLRLPILFMGSFIMAVQTLPDLWWVIVLMV
ILIGLIMALVMSQMGPRFGKFQKLMDKINRIAKENLRGVRVVKSFVQEREQYAKFKEASKELLDLNLFIGYGFSLMQPTL
MLVSYLAVYVSIYMVSGMVETDPAVIGNIASFMTYMMQIMFSIIMVGFMGMQASRAFVSIGRIKEVLNTEPAMTFETDQE
EEVSGSIVFEDVSFTYPNDDEPTLRHISFSIEPGQMIGVVGATGAGKSTLAQLIPRLFDPQEGQILLGGKLITSLSQATL
RQTVSIVLQKAILFSGTIADNLRQGSATADDYAMERAARIAQAMEFIDRMDGRYESQVEERGNNFSGGQKQRMSIARGVI
NQPKILVLDDSTSALDAKSEKLVQEALNKELKGTTTVIIAQKISSVVKADKILVLDQGQLLGEGTHAELLANNAVYREIY
DTQKGKEED

Nucleotide


Download         Length: 1710 bp        

>NTDB_id=394556 GE022_RS09430 WP_164405445.1 1940785..1942494(-) (rcrP) [Streptococcus canis strain HL_77_2]
ATGCTTAAAGAGGCAATCCTGCGTTACAAATGGTACGTTTTAGGCTCGCTACTGATGATTATTGGGGTGGTTGCGAGTAG
TCTGTTACAACCTCATTATTTAAAAGATGTGTTAAGTGCCGTTATTCAAAATAACCAAGATAAGATTTATGATGTGGGGA
GGTTGTTGCTTATCATTGCCCTTGTGGGCTTGGTTTCTGGAACCCTTAATACGGTTTTATCAGCTAAGATTGCTCAAGGG
GTTTCAGCTGATATTCGTGAGAAGACTTTCCGAAAAATTCAGAGTTTTTCTTATGCCAATGTCGAGGCATTTAATGCTGG
GAACCTTGTCGTTCGGATGACCAATGATATTACTCAAATTCAAAATTTGGTGATGATGCTGTTTCAGGTTCTCCTTCGAT
TGCCAATTCTCTTTATGGGCTCTTTTATTATGGCAGTGCAGACCTTACCTGACTTGTGGTGGGTCATTGTGCTGATGGTT
ATTTTGATTGGTCTTATCATGGCTTTGGTCATGAGTCAGATGGGACCACGTTTTGGGAAATTCCAAAAATTGATGGACAA
GATTAATCGTATTGCCAAGGAAAACCTTCGCGGGGTGCGTGTGGTTAAATCCTTTGTGCAAGAACGGGAACAATATGCCA
AATTTAAAGAAGCTTCTAAAGAACTATTGGACTTGAATCTTTTTATCGGCTATGGCTTTTCGTTGATGCAACCAACTTTG
ATGCTAGTATCTTATTTGGCAGTTTATGTATCCATCTACATGGTTTCTGGCATGGTTGAAACAGACCCAGCAGTTATTGG
AAATATTGCTTCCTTTATGACTTATATGATGCAAATCATGTTTTCAATTATCATGGTTGGCTTTATGGGCATGCAAGCCA
GTCGTGCCTTTGTTTCTATTGGTCGTATCAAAGAAGTGCTCAATACTGAGCCAGCCATGACCTTTGAAACTGATCAAGAA
GAAGAGGTTTCAGGTAGTATTGTGTTTGAGGATGTGAGCTTTACCTATCCTAATGATGATGAACCTACCTTGCGCCATAT
TTCCTTTAGCATTGAACCTGGTCAAATGATTGGCGTTGTGGGGGCTACTGGGGCTGGAAAGTCAACACTGGCACAGCTTA
TTCCTCGCTTGTTTGACCCACAAGAAGGTCAAATTTTGCTGGGAGGCAAACTGATTACATCTCTTAGTCAAGCGACTCTT
CGTCAGACGGTTTCTATCGTGTTGCAAAAGGCTATTCTCTTTTCAGGAACGATTGCGGACAACCTTCGCCAGGGGTCAGC
GACTGCAGATGATTATGCCATGGAACGGGCAGCACGTATTGCGCAGGCCATGGAATTTATTGACCGCATGGATGGTCGCT
ATGAGAGCCAAGTTGAAGAACGAGGCAACAACTTTTCTGGTGGGCAAAAACAACGGATGTCGATTGCGCGTGGCGTCATT
AACCAGCCTAAGATTCTTGTTTTAGACGATTCAACGTCTGCCTTGGATGCCAAGTCAGAAAAATTGGTACAAGAAGCCTT
AAACAAGGAATTGAAAGGCACAACGACCGTTATTATTGCCCAAAAGATTTCTTCAGTGGTGAAGGCTGATAAGATTTTAG
TTCTTGATCAGGGGCAGCTGCTTGGCGAAGGAACTCATGCTGAATTGTTAGCCAATAATGCGGTTTATCGTGAAATTTAT
GACACACAAAAAGGTAAGGAGGAAGACTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(16-282)

ABC transporter (ABC_tran)

(344-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

35.076

100

0.366