Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexA   Type   Machinery gene
Locus tag   GE022_RS05990 Genome accession   NZ_CP053790
Coordinates   1226896..1230528 (-) Length   1210 a.a.
NCBI ID   WP_164405813.1    Uniprot ID   -
Organism   Streptococcus canis strain HL_77_2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1221896..1235528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE022_RS05970 (GE022_005960) mscL 1223791..1224165 (+) 375 WP_003047993.1 large conductance mechanosensitive channel protein MscL -
  GE022_RS05975 (GE022_005965) rpsU 1224484..1224660 (-) 177 WP_000048058.1 30S ribosomal protein S21 -
  GE022_RS05980 (GE022_005970) - 1224762..1225574 (-) 813 WP_003047942.1 transporter substrate-binding domain-containing protein -
  GE022_RS05985 (GE022_005975) - 1225642..1226757 (-) 1116 WP_164228863.1 aminotransferase -
  GE022_RS05990 (GE022_005980) rexA 1226896..1230528 (-) 3633 WP_164405813.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  GE022_RS05995 (GE022_005985) rexB 1230525..1233749 (-) 3225 WP_164405814.1 ATP-dependent nuclease subunit B Machinery gene
  GE022_RS06005 (GE022_005995) - 1233925..1234829 (+) 905 Protein_1138 neutral zinc metallopeptidase -

Sequence

Protein


Download         Length: 1210 a.a.        Molecular weight: 138094.31 Da        Isoelectric Point: 5.3109

>NTDB_id=394518 GE022_RS05990 WP_164405813.1 1226896..1230528(-) (rexA) [Streptococcus canis strain HL_77_2]
MITFEPFLSPEAIAQLQETESRSQAAQKRTPQQIEAIYSSGQNILVSASAGSGKTFVMVERILDKILRGVAIDRLFISTF
TVKAATELRDRIEKKLYAQIAQTTDYQLKAYLTEQLQTLSQADIGTMDAFAQKLVNHYGYSIGLSPRFRIMQDKAEQDIL
KQDVFSKLFETFMAQSDSSLFKALVKNFSGNRKDASAFRDLIYSCYSFSQSTENPREWLQETFLKAAKTYQRLEDIPLQD
IELLLASMHDTADQLRDLTDMEEYGQLTKAGKPTVKYINHLKVIENLHHWARNFDHLYGRQGIGQLAKDLTTMLPSGNDV
TVAGTKYPIFKALHQKLTRFRHLETILAYQGESLPLLEVLQRFVVAFSDAYLAAKMQEAAFEFTDIAHFAIQILEENPDI
RQAYQQQYHEVMVDEYQDNNHMQERLLTLLSNGHNRFMVGDMKQSIYRFRQADPQIFNQKFKDYQAHPEQGKLILLKENF
RSQSEVLDASNAVFSHLMDESLGDILYDEQHQLVAGSDAQKVSYPEHRAKLLLYNTDRNDEVEEEDSDGLSPNEVNIVAK
EIIRLHNDQGVPFEDITLLVSTRTRNDAIFHAFNQYGIPLVADGGQQNYLKSVEVMVMLDTLRTINNPRNDYALVALLRS
PMFAFDEDELARLALQKGSDQDTACLYDKLEKALLGTGAHSDLVHDELMAKLSGFMETLKNWRRYAKIKSLHDLIWKIFN
DRFYFDLVASQAKAEQAQANLYALALRANQFEQSGYKGLSRFIGMIDKVLETKNDLADVEVTSPKQAVNLMTIHKSKGLE
FQYVFILNCDKRFAMTDVHAPFILNRQQGIGIKYLADVKELLGEETLASVKVSMETLPYQLNQQELRLATLSEQMRLLYV
AMTRAEKQLFLVGKASKQKSQELTDGKHTGKLLPLALREQLMTFQDWLLAITDTFTTEDLCFDVCFIEDSDLSPEVIGQL
QNPQVLHPDNLKDNRQSADIVRALDMLDKVSQLNADYEAAINLPTVRTPSQLKASYEPLLDSEGVEVMEKTYHTSTAFTL
PDFSKQVRVDASQVGSALHQLMQAIPLAYPVTAKTIAHALEQLELDQAVKAALDMVKVEQFFDKTVLGQQFQTYHRNLYR
EAPFAMLKTDPISQEDYVVRGIIDAFLLFEDHIELVDYKTDKYQNSLELKNRYQQQLTLYAEALTQTYGLPVTKKYLVLM
GGKKLEIVNI

Nucleotide


Download         Length: 3633 bp        

>NTDB_id=394518 GE022_RS05990 WP_164405813.1 1226896..1230528(-) (rexA) [Streptococcus canis strain HL_77_2]
GTGATAACATTTGAACCCTTTTTAAGCCCAGAAGCTATTGCTCAATTACAAGAAACAGAAAGCCGTAGTCAAGCAGCTCA
AAAAAGAACCCCCCAGCAGATTGAAGCCATATACAGTAGCGGTCAAAATATCCTTGTGTCAGCCTCTGCTGGGTCAGGAA
AAACCTTTGTGATGGTAGAACGCATTCTTGATAAAATCCTGAGAGGAGTTGCTATTGATCGGTTATTTATTTCCACCTTT
ACCGTTAAGGCAGCTACGGAATTGCGTGACCGTATTGAGAAAAAATTGTATGCTCAAATCGCTCAAACGACAGATTATCA
GCTAAAAGCCTACCTAACAGAGCAGCTGCAGACCCTGTCTCAGGCAGATATTGGCACCATGGATGCCTTTGCCCAAAAGT
TGGTCAATCACTATGGTTATAGCATTGGTTTGTCGCCTCGATTTCGTATTATGCAAGATAAGGCCGAGCAAGATATTTTA
AAACAGGACGTTTTTAGCAAGCTATTTGAAACCTTTATGGCACAAAGTGATTCTTCTTTGTTCAAAGCACTGGTTAAAAA
TTTTTCTGGTAACCGAAAAGATGCATCCGCTTTTAGAGATCTGATTTATAGCTGTTATTCTTTTAGCCAATCTACCGAAA
ACCCAAGAGAATGGTTGCAAGAAACGTTCTTAAAAGCAGCAAAAACCTATCAGCGCCTTGAAGATATACCTCTGCAAGAC
ATTGAATTATTGTTGGCAAGCATGCATGATACCGCAGATCAGTTAAGAGATTTGACTGACATGGAAGAATATGGTCAACT
GACCAAGGCTGGTAAACCAACGGTCAAATATATTAACCACCTAAAGGTTATTGAAAATCTTCATCATTGGGCGCGGAATT
TTGACCATCTCTATGGTAGGCAAGGAATTGGCCAATTGGCTAAAGACTTGACCACAATGCTCCCTTCTGGCAATGACGTG
ACTGTTGCTGGTACCAAGTATCCTATTTTTAAAGCCTTACACCAAAAATTAACACGCTTTAGACACTTAGAGACGATTTT
GGCATACCAAGGGGAAAGTCTTCCTTTGTTGGAAGTGTTGCAACGTTTTGTCGTAGCCTTTTCAGATGCCTATCTGGCCG
CTAAGATGCAAGAAGCAGCCTTTGAATTTACAGATATTGCCCATTTTGCCATTCAGATTTTAGAAGAAAACCCTGACATC
AGACAGGCCTACCAGCAGCAGTATCATGAAGTCATGGTTGATGAATACCAAGATAACAACCACATGCAGGAGCGCTTATT
AACTTTATTATCAAATGGTCATAATCGTTTTATGGTTGGTGATATGAAGCAATCCATTTACCGATTTCGACAAGCAGATC
CTCAAATTTTCAATCAGAAATTCAAAGATTATCAGGCTCATCCTGAGCAAGGGAAGCTTATTTTACTGAAAGAAAATTTC
CGAAGCCAATCAGAAGTTTTGGATGCCAGTAATGCTGTTTTTAGCCATTTGATGGATGAATCTCTGGGAGACATTTTATA
CGATGAGCAACATCAGTTGGTTGCTGGTAGCGATGCCCAAAAAGTGTCCTATCCTGAACATCGTGCTAAATTATTGCTTT
ATAACACTGACCGAAATGACGAAGTAGAAGAGGAAGATTCTGATGGCTTATCACCTAATGAGGTGAATATTGTTGCCAAA
GAAATCATCCGATTGCATAATGACCAAGGAGTACCTTTTGAAGACATCACCCTTCTTGTCTCAACAAGGACAAGAAATGA
TGCTATTTTTCATGCCTTTAATCAGTATGGTATCCCACTAGTAGCTGACGGTGGTCAGCAAAATTACCTCAAATCGGTTG
AAGTCATGGTCATGTTGGATACCTTGAGAACCATTAATAACCCAAGGAATGATTATGCCCTTGTTGCCCTGTTGCGCTCA
CCAATGTTTGCCTTTGATGAGGACGAATTAGCAAGGCTGGCGCTTCAAAAAGGCAGTGACCAAGATACTGCTTGTCTTTA
TGACAAATTGGAAAAGGCCTTACTTGGAACGGGTGCTCACTCAGACTTAGTGCATGATGAGTTAATGGCAAAATTAAGTG
GTTTTATGGAAACCTTAAAGAATTGGCGTCGTTATGCTAAAATCAAATCTTTGCATGACCTCATTTGGAAAATTTTCAAT
GACCGGTTTTACTTCGATCTGGTTGCTAGTCAAGCCAAGGCTGAGCAGGCCCAAGCCAATCTTTATGCGCTAGCCCTGCG
TGCCAATCAATTTGAGCAATCAGGATACAAAGGGTTATCTCGCTTTATTGGCATGATTGACAAGGTGTTAGAAACGAAAA
ATGATTTAGCAGACGTTGAAGTAACTAGTCCTAAGCAAGCGGTCAATCTCATGACGATTCACAAATCCAAGGGATTGGAA
TTCCAGTACGTGTTTATCCTTAACTGTGACAAACGCTTTGCCATGACAGATGTTCATGCTCCGTTTATTTTAAATCGTCA
GCAGGGTATTGGAATCAAGTACTTGGCTGATGTTAAGGAGCTTTTGGGTGAAGAAACCTTAGCGTCAGTCAAAGTGAGTA
TGGAAACCTTGCCTTATCAGTTGAATCAGCAAGAGTTACGCTTGGCAACCTTATCTGAACAAATGCGGCTGTTGTACGTT
GCCATGACACGAGCTGAGAAACAACTTTTCCTTGTTGGAAAAGCCAGCAAGCAAAAAAGCCAAGAGTTGACAGATGGTAA
GCATACTGGTAAGTTGTTGCCTTTAGCACTTCGAGAACAGTTGATGACTTTCCAAGACTGGCTCTTGGCTATCACAGATA
CCTTCACCACTGAAGACCTTTGTTTTGATGTGTGCTTTATTGAGGATAGCGACTTAAGTCCAGAGGTTATTGGTCAACTT
CAAAATCCACAAGTATTACATCCAGACAACCTCAAGGATAACCGTCAATCTGCGGACATTGTGCGTGCCTTAGATATGCT
AGACAAAGTGTCTCAATTAAATGCTGACTATGAAGCCGCCATCAATCTCCCAACGGTTCGCACGCCTAGCCAACTAAAGG
CTTCCTATGAGCCCTTGTTAGACTCAGAGGGGGTAGAGGTCATGGAAAAAACTTACCACACCTCTACAGCCTTTACTTTA
CCTGATTTTTCAAAACAGGTCAGAGTTGACGCTAGCCAAGTTGGGTCAGCCCTCCACCAATTGATGCAGGCCATTCCCTT
GGCTTATCCAGTAACAGCCAAAACAATCGCACATGCTCTAGAGCAACTAGAGTTGGACCAAGCGGTTAAGGCAGCTCTTG
ATATGGTGAAAGTTGAGCAATTCTTTGATAAGACAGTCTTGGGGCAGCAGTTTCAGACCTATCACAGGAATTTGTACAGA
GAAGCGCCTTTTGCCATGTTAAAAACAGATCCTATTAGTCAAGAAGACTATGTTGTTCGGGGAATCATTGATGCTTTTCT
CTTATTTGAGGATCATATTGAACTAGTGGATTATAAAACGGATAAATACCAAAATTCTTTGGAGTTAAAAAACCGTTACC
AACAACAGTTGACTTTATATGCAGAAGCCCTTACTCAGACCTATGGTCTTCCTGTAACCAAGAAATATTTGGTTCTAATG
GGAGGCAAAAAATTGGAAATTGTCAATATCTGA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1037-1189)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(30-465)

UvrD-like helicase C-terminal domain (UvrD_C)

(474-892)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

51.903

71.653

0.372

Multiple sequence alignment