Detailed information
Bioinformatically predicted
Overview
| Name | rpoS | Type | Regulator |
| Locus tag | GE022_RS05960 | Genome accession | NZ_CP053790 |
| Coordinates | 1220732..1221841 (-) | Length | 369 a.a. |
| NCBI ID | WP_003047995.1 | Uniprot ID | A0A2D4DP26 |
| Organism | Streptococcus canis strain HL_77_2 | ||
| Function | regulation of chitinases (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1215732..1226841
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GE022_RS05935 (GE022_005925) | - | 1216119..1216925 (-) | 807 | WP_164228873.1 | ABC transporter permease | - |
| GE022_RS05940 (GE022_005930) | - | 1216922..1217860 (-) | 939 | WP_003047999.1 | glycosyltransferase family 2 protein | - |
| GE022_RS05945 (GE022_005935) | cps2T | 1217857..1219005 (-) | 1149 | WP_164228869.1 | beta 1-4 rhamnosyltransferase Cps2T | - |
| GE022_RS05950 (GE022_005940) | rfbD | 1219124..1219978 (-) | 855 | WP_003047997.1 | dTDP-4-dehydrorhamnose reductase | - |
| GE022_RS05955 (GE022_005945) | - | 1220116..1220454 (-) | 339 | WP_164405812.1 | metal-sulfur cluster assembly factor | - |
| GE022_RS05960 (GE022_005950) | rpoS | 1220732..1221841 (-) | 1110 | WP_003047995.1 | RNA polymerase sigma factor RpoD | Regulator |
| GE022_RS05965 (GE022_005955) | dnaG | 1221850..1223664 (-) | 1815 | WP_099983056.1 | DNA primase | - |
| GE022_RS05970 (GE022_005960) | mscL | 1223791..1224165 (+) | 375 | WP_003047993.1 | large conductance mechanosensitive channel protein MscL | - |
| GE022_RS05975 (GE022_005965) | rpsU | 1224484..1224660 (-) | 177 | WP_000048058.1 | 30S ribosomal protein S21 | - |
| GE022_RS05980 (GE022_005970) | - | 1224762..1225574 (-) | 813 | WP_003047942.1 | transporter substrate-binding domain-containing protein | - |
| GE022_RS05985 (GE022_005975) | - | 1225642..1226757 (-) | 1116 | WP_164228863.1 | aminotransferase | - |
Sequence
Protein
Download Length: 369 a.a. Molecular weight: 42216.99 Da Isoelectric Point: 4.5491
>NTDB_id=394517 GE022_RS05960 WP_003047995.1 1220732..1221841(-) (rpoS) [Streptococcus canis strain HL_77_2]
MTKEKEITTFNVQVAEFIRHHKKEGTAIDDDVTETLVIPFALDADQIDDLLERLTDGGISITDKEGNPSSKYVVEEPKPE
ELTDEELIGSNSAKVNDPVRMYLKEIGVVPLLTSEEEKVLAVAVAEGDLEAKQRLAEANLRLVVSIAKRYVGRGMQFLDL
IQEGNMGLMKAVDKFDYSKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIA
ERMEMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLDTLTDREENVLRLRFG
LDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQLRDFMED
MTKEKEITTFNVQVAEFIRHHKKEGTAIDDDVTETLVIPFALDADQIDDLLERLTDGGISITDKEGNPSSKYVVEEPKPE
ELTDEELIGSNSAKVNDPVRMYLKEIGVVPLLTSEEEKVLAVAVAEGDLEAKQRLAEANLRLVVSIAKRYVGRGMQFLDL
IQEGNMGLMKAVDKFDYSKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIA
ERMEMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLDTLTDREENVLRLRFG
LDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQLRDFMED
Nucleotide
Download Length: 1110 bp
>NTDB_id=394517 GE022_RS05960 WP_003047995.1 1220732..1221841(-) (rpoS) [Streptococcus canis strain HL_77_2]
ATGACAAAAGAAAAAGAAATTACAACTTTTAATGTTCAAGTTGCGGAGTTTATTCGTCATCATAAAAAAGAAGGAACAGC
GATTGATGATGACGTGACTGAAACACTCGTCATTCCATTTGCCTTGGACGCTGATCAAATCGACGACCTACTTGAGCGGC
TAACAGATGGTGGCATCTCCATTACAGACAAGGAGGGCAACCCCTCATCAAAATACGTGGTTGAAGAACCTAAACCCGAA
GAGCTCACTGATGAGGAATTAATTGGAAGCAATTCTGCTAAGGTAAATGACCCTGTCCGTATGTACCTCAAAGAAATCGG
TGTCGTACCACTTCTGACAAGTGAAGAAGAAAAGGTATTGGCGGTTGCTGTAGCAGAAGGTGATCTAGAAGCTAAACAAC
GTTTAGCAGAAGCCAACTTGCGTCTGGTAGTCTCTATTGCTAAACGTTATGTCGGTCGCGGCATGCAATTCTTGGATTTG
ATTCAAGAAGGCAATATGGGGTTGATGAAAGCTGTTGATAAGTTTGACTATTCCAAAGGGTTTAAGTTTTCAACCTACGC
TACATGGTGGATTCGCCAAGCCATTACTCGTGCTATTGCTGACCAAGCACGTACCATTCGTATCCCAGTTCACATGGTAG
AAACCATTAACAAATTGGTTCGTGAGCAACGTAATTTATTGCAGGAATTAGGACAAGATCCAACACCAGAACAAATTGCA
GAACGCATGGAAATGACACCTGATAAGGTTCGTGAAATTTTGAAAATTGCTCAAGAGCCAGTCTCTCTAGAAACCCCAAT
TGGTGAAGAAGATGATAGCCACTTGGGTGATTTTATCGAAGATGAAGTCATTGAAAATCCAGTTGACTACACAACACGCG
TGGTTCTTCGTGAACAGTTGGATGAGGTCTTGGACACATTAACAGACCGTGAGGAAAATGTTCTCCGCCTACGTTTTGGA
CTTGACGATGGTAAAATGCGTACCCTTGAAGATGTGGGCAAAGTCTTTAACGTCACCCGTGAACGTATCCGTCAAATTGA
AGCTAAGGCACTTCGCAAACTTCGCCACCCAAGCCGCAGTAAGCAATTAAGAGATTTTATGGAGGACTAA
ATGACAAAAGAAAAAGAAATTACAACTTTTAATGTTCAAGTTGCGGAGTTTATTCGTCATCATAAAAAAGAAGGAACAGC
GATTGATGATGACGTGACTGAAACACTCGTCATTCCATTTGCCTTGGACGCTGATCAAATCGACGACCTACTTGAGCGGC
TAACAGATGGTGGCATCTCCATTACAGACAAGGAGGGCAACCCCTCATCAAAATACGTGGTTGAAGAACCTAAACCCGAA
GAGCTCACTGATGAGGAATTAATTGGAAGCAATTCTGCTAAGGTAAATGACCCTGTCCGTATGTACCTCAAAGAAATCGG
TGTCGTACCACTTCTGACAAGTGAAGAAGAAAAGGTATTGGCGGTTGCTGTAGCAGAAGGTGATCTAGAAGCTAAACAAC
GTTTAGCAGAAGCCAACTTGCGTCTGGTAGTCTCTATTGCTAAACGTTATGTCGGTCGCGGCATGCAATTCTTGGATTTG
ATTCAAGAAGGCAATATGGGGTTGATGAAAGCTGTTGATAAGTTTGACTATTCCAAAGGGTTTAAGTTTTCAACCTACGC
TACATGGTGGATTCGCCAAGCCATTACTCGTGCTATTGCTGACCAAGCACGTACCATTCGTATCCCAGTTCACATGGTAG
AAACCATTAACAAATTGGTTCGTGAGCAACGTAATTTATTGCAGGAATTAGGACAAGATCCAACACCAGAACAAATTGCA
GAACGCATGGAAATGACACCTGATAAGGTTCGTGAAATTTTGAAAATTGCTCAAGAGCCAGTCTCTCTAGAAACCCCAAT
TGGTGAAGAAGATGATAGCCACTTGGGTGATTTTATCGAAGATGAAGTCATTGAAAATCCAGTTGACTACACAACACGCG
TGGTTCTTCGTGAACAGTTGGATGAGGTCTTGGACACATTAACAGACCGTGAGGAAAATGTTCTCCGCCTACGTTTTGGA
CTTGACGATGGTAAAATGCGTACCCTTGAAGATGTGGGCAAAGTCTTTAACGTCACCCGTGAACGTATCCGTCAAATTGA
AGCTAAGGCACTTCGCAAACTTCGCCACCCAAGCCGCAGTAAGCAATTAAGAGATTTTATGGAGGACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rpoS | Vibrio cholerae O1 biovar El Tor strain E7946 |
45.578 |
79.675 |
0.363 |