Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   FPL20_RS16710 Genome accession   NZ_CP045478
Coordinates   3171264..3172157 (-) Length   297 a.a.
NCBI ID   WP_163113761.1    Uniprot ID   -
Organism   Bacillus subtilis strain JD-014     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3166264..3177157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FPL20_RS16695 (FPL20_GE03171) xerC 3166636..3167550 (-) 915 WP_003231988.1 tyrosine recombinase XerC -
  FPL20_RS16700 (FPL20_GE03172) trmFO 3167618..3168925 (-) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  FPL20_RS16705 (FPL20_GE03173) topA 3169001..3171076 (-) 2076 WP_003245599.1 type I DNA topoisomerase -
  FPL20_RS16710 (FPL20_GE03174) dprA 3171264..3172157 (-) 894 WP_163113761.1 DNA-processing protein DprA Machinery gene
  FPL20_RS16715 (FPL20_GE03175) sucD 3172218..3173120 (-) 903 WP_003238566.1 succinate--CoA ligase subunit alpha -
  FPL20_RS16720 (FPL20_GE03176) sucC 3173149..3174306 (-) 1158 WP_003244732.1 ADP-forming succinate--CoA ligase subunit beta -
  FPL20_RS16725 (FPL20_GE03177) ylqH 3174479..3174760 (-) 282 WP_003232001.1 FlhB-like flagellar biosynthesis protein -
  FPL20_RS16730 (FPL20_GE03178) - 3174757..3176487 (-) 1731 WP_003245096.1 hypothetical protein -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 32951.31 Da        Isoelectric Point: 9.9142

>NTDB_id=394510 FPL20_RS16710 WP_163113761.1 3171264..3172157(-) (dprA) [Bacillus subtilis strain JD-014]
MDQAAVCLTICRINQLLSPSLLLKWWKADPSMSLTSPVLQTVTRDQIKAAALKNEIEQFYPKLPRVLAAYREQGINTILI
SSKQYPFWLKSIYDPPAVLFAKGDMTLLSKGRKIGIVGTRNPTAYGKQVVNHLTKEICRKGWVIVSGLASGIDGMSHAAS
IKAKGRTIGVIAGGFQHIYPRENLQLADHMAKHHILLSEHPPETKPQKWHFPMRNRIISGLSEGVIVVQGKEKSGSLITA
YQALEQGREVFAVPGSLFDPYAGGPIKLIQQGAKAIWSAEDIFEELPERNVQYTEPF

Nucleotide


Download         Length: 894 bp        

>NTDB_id=394510 FPL20_RS16710 WP_163113761.1 3171264..3172157(-) (dprA) [Bacillus subtilis strain JD-014]
TTGGATCAGGCCGCTGTCTGCCTAACGATTTGCAGAATCAATCAATTATTATCCCCATCCCTTCTATTAAAATGGTGGAA
AGCCGATCCGTCTATGTCGCTGACATCACCCGTGTTACAAACGGTTACTCGTGATCAAATAAAAGCAGCTGCATTAAAAA
ACGAAATAGAACAATTTTATCCAAAGCTCCCGCGTGTACTTGCTGCTTATCGTGAGCAAGGCATTAACACCATCCTTATT
TCTTCAAAGCAATATCCTTTCTGGCTTAAAAGCATTTATGATCCCCCTGCCGTACTGTTTGCAAAAGGTGATATGACTCT
TCTTTCGAAAGGGAGAAAAATTGGAATTGTAGGCACAAGAAATCCAACAGCTTATGGGAAACAAGTTGTCAATCATCTTA
CAAAAGAGATCTGTCGTAAAGGTTGGGTGATTGTCAGCGGACTGGCGTCTGGGATAGACGGAATGTCCCATGCTGCAAGT
ATTAAGGCGAAGGGGCGGACAATTGGCGTCATTGCAGGCGGATTTCAACACATTTATCCCCGAGAAAACCTTCAGTTAGC
AGATCACATGGCTAAACACCATATCCTGCTGTCAGAGCACCCACCTGAAACTAAACCCCAAAAATGGCATTTCCCTATGA
GAAACCGTATTATCAGCGGACTAAGTGAAGGCGTTATTGTCGTTCAGGGCAAAGAAAAAAGCGGTTCGCTGATTACTGCC
TATCAAGCATTGGAACAAGGGAGAGAGGTATTTGCCGTACCCGGTTCATTGTTTGACCCTTACGCCGGAGGTCCTATAAA
ACTGATCCAGCAGGGGGCTAAAGCCATATGGTCAGCAGAGGATATTTTCGAGGAACTTCCTGAGAGAAACGTTCAATATA
CGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

99.663

100

0.997
  dprA Legionella pneumophila strain ERS1305867

37.838

99.663

0.377
  dprA Lactococcus lactis subsp. cremoris KW2

42.105

89.562

0.377

Multiple sequence alignment