Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   GE023_RS08565 Genome accession   NZ_CP053789
Coordinates   1723640..1724674 (-) Length   344 a.a.
NCBI ID   WP_003044958.1    Uniprot ID   A0A2D4DM57
Organism   Streptococcus canis strain HL_98_2     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1718640..1729674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE023_RS08530 (GE023_008525) - 1719425..1719727 (-) 303 WP_003044943.1 YlxQ-related RNA-binding protein -
  GE023_RS08535 (GE023_008530) - 1719720..1720016 (-) 297 WP_003044945.1 YlxR family protein -
  GE023_RS08540 (GE023_008535) nusA 1720032..1721189 (-) 1158 WP_159304445.1 transcription termination factor NusA -
  GE023_RS08545 (GE023_008540) rimP 1721359..1721877 (-) 519 WP_172756887.1 ribosome maturation factor RimP -
  GE023_RS08555 (GE023_008550) trmB 1722159..1722794 (-) 636 WP_093999293.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  GE023_RS08560 (GE023_008555) ccrZ 1722794..1723585 (-) 792 WP_003044956.1 cell cycle regulator CcrZ -
  GE023_RS08565 (GE023_008560) pptB 1723640..1724674 (-) 1035 WP_003044958.1 ABC transporter permease Regulator
  GE023_RS08570 (GE023_008565) pptA 1724677..1725402 (-) 726 WP_159306111.1 ABC transporter ATP-binding protein Regulator
  GE023_RS08575 (GE023_008570) - 1725474..1725893 (+) 420 WP_003044965.1 HIT family protein -
  GE023_RS08580 (GE023_008575) - 1725890..1726207 (+) 318 WP_003044966.1 hypothetical protein -
  GE023_RS08585 (GE023_008580) - 1726256..1727527 (-) 1272 WP_125074154.1 LCP family protein -
  GE023_RS08590 (GE023_008585) - 1727536..1728060 (-) 525 WP_159306112.1 GNAT family N-acetyltransferase -
  GE023_RS08595 (GE023_008590) tsaE 1728053..1728496 (-) 444 WP_039994873.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 39707.58 Da        Isoelectric Point: 10.1375

>NTDB_id=394440 GE023_RS08565 WP_003044958.1 1723640..1724674(-) (pptB) [Streptococcus canis strain HL_98_2]
MKALFLKRRQDFHKQQSKYLRYVFNDHFVLVLMFLLGFALVQYSQLLRQFPSNHLPVQACLVVLVLLLLNVGSVATYLEE
ADQHFLLPKEEEVVTHIKQAERSAFILWAGLQTAILAFLYPIFNRLGFSLVTFSLCLLVLVAVKKILLSRKVGRFLREEG
LDWEKAVAFENNRKQAILKFYSLFTSVKGISTKVKKRTYLNPLLKLVKEDAKNLWVTLYLKAFLRSSDYLGLFLRLLLLS
SLSLLFITNAYLSVGLALVFNYLTLFQLLSLYHHYDYHYMTGLYPENNQGKKANLLAFLRGLSCLILVTNLLLCHSLEKA
LILVVVMGIVTLLYLPYKLKKIID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=394440 GE023_RS08565 WP_003044958.1 1723640..1724674(-) (pptB) [Streptococcus canis strain HL_98_2]
ATGAAAGCATTATTTCTTAAACGCCGTCAGGATTTTCACAAACAACAAAGCAAGTATTTACGCTATGTCTTTAATGACCA
CTTTGTCTTGGTCTTGATGTTTTTGCTGGGCTTTGCTTTGGTGCAATACAGTCAATTATTGAGACAGTTCCCAAGCAATC
ACCTACCGGTTCAGGCCTGTCTAGTGGTATTGGTCTTATTATTACTCAATGTGGGGTCTGTGGCCACTTATTTAGAAGAA
GCTGATCAACATTTTCTCCTTCCTAAAGAAGAAGAGGTCGTTACTCATATCAAACAAGCTGAGCGTTCTGCTTTTATCCT
TTGGGCTGGTTTACAGACAGCTATTTTAGCTTTTTTGTATCCTATCTTCAATCGCCTAGGTTTCTCCCTAGTTACCTTTT
CTCTTTGCCTTTTGGTTTTAGTAGCGGTGAAAAAGATCCTTTTAAGTCGTAAAGTAGGCCGTTTTCTAAGAGAGGAGGGG
TTGGATTGGGAAAAAGCAGTCGCCTTTGAGAACAATCGTAAGCAGGCTATTTTGAAGTTTTATTCTCTTTTTACAAGTGT
TAAGGGAATTTCTACCAAGGTTAAGAAGCGAACCTACTTAAATCCTCTGTTAAAATTAGTTAAGGAAGATGCTAAAAACC
TCTGGGTAACGCTTTATCTGAAAGCTTTTTTGCGGAGCTCAGATTATTTAGGGCTATTTCTGAGGTTGTTGTTATTAAGC
TCGCTATCTTTGCTTTTTATTACCAATGCGTATTTATCGGTAGGCTTGGCGCTGGTCTTCAATTATTTGACTCTGTTCCA
ATTACTTTCTCTTTACCATCATTACGATTACCACTACATGACCGGCCTTTATCCTGAAAATAATCAAGGCAAGAAGGCAA
ATCTATTGGCTTTTTTGAGAGGATTAAGTTGTCTGATATTAGTCACCAACCTCCTGCTCTGCCATTCTTTAGAAAAAGCC
CTTATTTTAGTAGTTGTTATGGGAATCGTTACGCTTCTCTACCTTCCTTATAAGTTAAAGAAGATAATTGACTAA

Domains

Predicted by InterProScan.

Bacterial ABC transporter protein EcsB (EcsB)

(158-326)

Bacterial ABC transporter protein EcsB (EcsB)

(2-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2D4DM57

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

45.93

100

0.459
  pptB Streptococcus salivarius strain HSISS4

45.058

100

0.451

Multiple sequence alignment