Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   GBR75_RS07780 Genome accession   NZ_CP045468
Coordinates   1630902..1631588 (-) Length   228 a.a.
NCBI ID   WP_078055782.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SAW1     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1625902..1636588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBR75_RS07760 (GBR75_07905) rpsT 1626816..1627067 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  GBR75_RS07765 (GBR75_07910) holA 1627112..1628086 (-) 975 WP_001282570.1 DNA polymerase III subunit delta -
  GBR75_RS07770 (GBR75_07915) comEC 1628143..1630344 (-) 2202 WP_000967504.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  GBR75_RS07775 (GBR75_07920) - 1630349..1630810 (-) 462 WP_000439693.1 ComE operon protein 2 -
  GBR75_RS07780 (GBR75_07925) comEA 1630902..1631588 (-) 687 WP_078055782.1 ComEA family DNA-binding protein Machinery gene
  GBR75_RS07785 (GBR75_07930) - 1631628..1632344 (-) 717 WP_000942456.1 class I SAM-dependent DNA methyltransferase -
  GBR75_RS07790 (GBR75_07935) rsfS 1632347..1632700 (-) 354 WP_001088020.1 ribosome silencing factor -
  GBR75_RS07795 (GBR75_07940) yqeK 1632701..1633285 (-) 585 WP_001017838.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  GBR75_RS07800 (GBR75_07945) nadD 1633275..1633844 (-) 570 WP_000725167.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  GBR75_RS07805 (GBR75_07950) yhbY 1633847..1634137 (-) 291 WP_000955235.1 ribosome assembly RNA-binding protein YhbY -
  GBR75_RS07810 (GBR75_07955) aroE 1634141..1634947 (-) 807 WP_000666767.1 shikimate dehydrogenase -
  GBR75_RS07815 (GBR75_07960) yqeH 1634961..1636061 (-) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25761.45 Da        Isoelectric Point: 9.6753

>NTDB_id=394393 GBR75_RS07780 WP_078055782.1 1630902..1631588(-) (comEA) [Staphylococcus aureus strain SAW1]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=394393 GBR75_RS07780 WP_078055782.1 1630902..1631588(-) (comEA) [Staphylococcus aureus strain SAW1]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCTAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTGCTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
GAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

98.678

99.561

0.982
  comEA Staphylococcus aureus N315

98.678

99.561

0.982

Multiple sequence alignment