Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE   Type   Machinery gene
Locus tag   GE023_RS00845 Genome accession   NZ_CP053789
Coordinates   135668..135943 (+) Length   91 a.a.
NCBI ID   WP_003046190.1    Uniprot ID   -
Organism   Streptococcus canis strain HL_98_2     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 130668..140943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE023_RS00820 (GE023_000820) - 132598..132963 (+) 366 WP_125073632.1 DUF1033 family protein -
  GE023_RS00825 (GE023_000825) comGA 133050..133991 (+) 942 WP_003046182.1 competence type IV pilus ATPase ComGA Machinery gene
  GE023_RS00830 (GE023_000830) comGB 133924..134958 (+) 1035 WP_223824829.1 competence type IV pilus assembly protein ComGB Machinery gene
  GE023_RS00835 (GE023_000835) comGC 134961..135287 (+) 327 WP_159305269.1 competence type IV pilus major pilin ComGC Machinery gene
  GE023_RS00840 (GE023_000840) comGD 135262..135690 (+) 429 WP_236494085.1 competence type IV pilus minor pilin ComGD Machinery gene
  GE023_RS00845 (GE023_000845) comGE 135668..135943 (+) 276 WP_003046190.1 competence type IV pilus minor pilin ComGE Machinery gene
  GE023_RS00850 (GE023_000850) comGF 135924..136364 (+) 441 WP_003046192.1 competence type IV pilus minor pilin ComGF Machinery gene
  GE023_RS00855 (GE023_000855) comGG 136342..136722 (+) 381 WP_003046193.1 competence type IV pilus minor pilin ComGG -
  GE023_RS00860 (GE023_000860) comGH 136772..137725 (+) 954 WP_003046195.1 class I SAM-dependent methyltransferase Machinery gene
  GE023_RS00865 (GE023_000865) - 137784..138980 (+) 1197 WP_093998734.1 acetate kinase -
  GE023_RS00870 (GE023_000870) - 139300..139506 (+) 207 WP_003046200.1 helix-turn-helix transcriptional regulator -
  GE023_RS00875 (GE023_000875) - 139507..139647 (+) 141 Protein_126 CPBP family glutamic-type intramembrane protease -
  GE023_RS10810 - 139772..139927 (+) 156 WP_236493542.1 hypothetical protein -

Sequence

Protein


Download         Length: 91 a.a.        Molecular weight: 10262.90 Da        Isoelectric Point: 7.2771

>NTDB_id=394374 GE023_RS00845 WP_003046190.1 135668..135943(+) (comGE) [Streptococcus canis strain HL_98_2]
MKGYIALESVMATGLLFSIVILVLTSLQQGQVALTHYRNQQEKLNLALMAVQTGREEVTLNGCHITVRRTEHQISIQDDK
GEVIRIEQKDK

Nucleotide


Download         Length: 276 bp        

>NTDB_id=394374 GE023_RS00845 WP_003046190.1 135668..135943(+) (comGE) [Streptococcus canis strain HL_98_2]
GTGAAAGGTTACATAGCCCTTGAAAGTGTGATGGCGACAGGGCTCTTATTTTCCATTGTTATCCTAGTTTTGACTAGTTT
ACAGCAAGGTCAGGTCGCCCTAACCCATTATCGCAATCAACAAGAAAAACTGAATTTGGCGCTGATGGCAGTACAGACAG
GTCGTGAAGAAGTCACACTCAATGGCTGTCATATTACTGTTCGGAGAACGGAACATCAGATTAGTATTCAGGACGATAAA
GGAGAAGTGATTAGGATTGAACAAAAGGACAAATAG

Domains

Predicted by InterProScan.

Type II secretory pathway pseudopilin (ComGE)

(5-86)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Streptococcus mutans UA140

38.202

97.802

0.374
  comGE Streptococcus mutans UA159

38.202

97.802

0.374