Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   GCU76_RS19725 Genome accession   NZ_CP045425
Coordinates   3637322..3638011 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain JAAA     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3632322..3643011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GCU76_RS19690 flgN 3632524..3633006 (-) 483 WP_014481048.1 flagellar protein FlgN -
  GCU76_RS19695 flgM 3633022..3633288 (-) 267 WP_015384783.1 flagellar biosynthesis anti-sigma factor FlgM -
  GCU76_RS19700 yvyF 3633369..3633788 (-) 420 WP_017695307.1 TIGR03826 family flagellar region protein -
  GCU76_RS19705 comFC 3633862..3634584 (-) 723 WP_026113628.1 comF operon protein ComFC Machinery gene
  GCU76_RS19710 comFB 3634548..3634830 (-) 283 Protein_3797 late competence development ComFB family protein -
  GCU76_RS19715 comFA 3634882..3636273 (-) 1392 WP_017695309.1 ATP-dependent helicase ComFA Machinery gene
  GCU76_RS19720 fakBA 3636379..3637224 (-) 846 WP_152425625.1 DegV family protein -
  GCU76_RS19725 degU 3637322..3638011 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  GCU76_RS19730 degS 3638094..3639251 (-) 1158 WP_041055024.1 two-component sensor histidine kinase DegS Regulator
  GCU76_RS19735 yvyE 3639457..3640110 (+) 654 WP_003227979.1 YigZ family protein -
  GCU76_RS19740 tagV 3640110..3641285 (+) 1176 WP_041055022.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  GCU76_RS19745 tagO 3641358..3642434 (-) 1077 WP_041055019.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=394016 GCU76_RS19725 WP_003219701.1 3637322..3638011(-) (degU) [Bacillus subtilis strain JAAA]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=394016 GCU76_RS19725 WP_003219701.1 3637322..3638011(-) (degU) [Bacillus subtilis strain JAAA]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGATGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCGGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment