Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   GCU76_RS19715 Genome accession   NZ_CP045425
Coordinates   3634882..3636273 (-) Length   463 a.a.
NCBI ID   WP_017695309.1    Uniprot ID   -
Organism   Bacillus subtilis strain JAAA     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3629882..3641273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GCU76_RS19680 flgL 3630075..3630971 (-) 897 WP_152425624.1 flagellar hook-associated protein FlgL -
  GCU76_RS19685 flgK 3630982..3632505 (-) 1524 WP_041055029.1 flagellar hook-associated protein FlgK -
  GCU76_RS19690 flgN 3632524..3633006 (-) 483 WP_014481048.1 flagellar protein FlgN -
  GCU76_RS19695 flgM 3633022..3633288 (-) 267 WP_015384783.1 flagellar biosynthesis anti-sigma factor FlgM -
  GCU76_RS19700 yvyF 3633369..3633788 (-) 420 WP_017695307.1 TIGR03826 family flagellar region protein -
  GCU76_RS19705 comFC 3633862..3634584 (-) 723 WP_026113628.1 comF operon protein ComFC Machinery gene
  GCU76_RS19710 comFB 3634548..3634830 (-) 283 Protein_3797 late competence development ComFB family protein -
  GCU76_RS19715 comFA 3634882..3636273 (-) 1392 WP_017695309.1 ATP-dependent helicase ComFA Machinery gene
  GCU76_RS19720 fakBA 3636379..3637224 (-) 846 WP_152425625.1 DegV family protein -
  GCU76_RS19725 degU 3637322..3638011 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  GCU76_RS19730 degS 3638094..3639251 (-) 1158 WP_041055024.1 two-component sensor histidine kinase DegS Regulator
  GCU76_RS19735 yvyE 3639457..3640110 (+) 654 WP_003227979.1 YigZ family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52474.49 Da        Isoelectric Point: 9.7310

>NTDB_id=394015 GCU76_RS19715 WP_017695309.1 3634882..3636273(-) (comFA) [Bacillus subtilis strain JAAA]
MNVPVEKNISFSKELRQTLRSRHLLRTELPFSDEMIEWHIKNGYITAENSISINKRGYRCNRCGQTDQRYFSFYHSSGKN
KLYCRSCIMMGRVSEEVPLYSWEEENEPNWKSIKLTWDGKLSSGQQKAANVLIEAISKKEEVLIWAVCGAGKTEILFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAFDVMIVDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKALNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHVKEGSPVFLFVPSVSILEKAAACFKGVDCRAESVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESPIFTESALVQIAGRTGRHKEYADGDVIFFHFGKTKSMLDARKHIKEMNELAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=394015 GCU76_RS19715 WP_017695309.1 3634882..3636273(-) (comFA) [Bacillus subtilis strain JAAA]
GTGAATGTGCCAGTTGAAAAAAACATTTCCTTTTCAAAAGAATTGCGGCAGACGCTTCGAAGCCGTCATTTGCTCAGGAC
TGAGCTCCCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGATATATCACTGCTGAAAATTCTATATCTATAA
ATAAACGGGGATATAGATGTAATAGGTGCGGCCAAACTGATCAGCGGTATTTTTCTTTTTATCACTCATCTGGAAAGAAT
AAGCTGTATTGCCGTTCCTGTATCATGATGGGCAGAGTGAGTGAGGAGGTTCCTCTATATTCATGGGAAGAGGAAAATGA
ACCAAACTGGAAGTCGATTAAACTGACATGGGATGGCAAGCTTTCAAGCGGACAGCAAAAAGCCGCCAATGTTTTAATTG
AAGCAATATCAAAAAAAGAAGAGGTCCTCATCTGGGCAGTTTGCGGCGCTGGAAAAACAGAAATACTGTTTCCTGGTATA
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATAGCAACACCTCGCACAGATGTTGTATTAGAGCTTGCTCCAAGACT
CAAGGCTGCCTTTCAAGGTGCTGACATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCTCCGCTTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCATTCGATGTAATGATCGTTGATGAAGTTGACGCTTTTCCATAT
TCTGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCACTGAACGGACAGTTACATTCAGTTCGCATTCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGGAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATGTAAAAGAAGGGAGTCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGCTGC
GTGCTTTAAAGGTGTTGATTGCCGAGCCGAATCTGTGCACGCAGAAGACAAGCATAGGAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCGATCTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCGCCTATCTTTACGGAAAGCGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTTCTTTCATTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAGCATATAAAAGAAATGAATG
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(326-423)

Type III restriction enzyme, res subunit (ResIII)

(120-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

96.328

100

0.963

Multiple sequence alignment