Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   GCU76_RS02005 Genome accession   NZ_CP045425
Coordinates   375560..375958 (-) Length   132 a.a.
NCBI ID   WP_017696126.1    Uniprot ID   A0AAP2LZ45
Organism   Bacillus subtilis strain JAAA     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 370560..380958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GCU76_RS01975 yckA 371260..371940 (-) 681 WP_017696121.1 amino acid ABC transporter permease -
  GCU76_RS01980 yckB 371950..372813 (-) 864 WP_072557073.1 transporter substrate-binding domain-containing protein -
  GCU76_RS01985 - 372976..373166 (+) 191 Protein_342 hypothetical protein -
  GCU76_RS01990 - 373211..373522 (+) 312 Protein_343 RDD family protein -
  GCU76_RS01995 yckD 373604..373936 (+) 333 WP_015252849.1 YckD family protein -
  GCU76_RS02000 bglC 374090..375523 (+) 1434 WP_152425339.1 6-phospho-beta-glucosidase -
  GCU76_RS02005 nin/comJ 375560..375958 (-) 399 WP_017696126.1 DNA-entry nuclease inhibitor Regulator
  GCU76_RS02010 nucA/comI 375985..376434 (-) 450 WP_017696127.1 DNA-entry nuclease Machinery gene
  GCU76_RS02015 tlpC 376602..378323 (-) 1722 WP_026113668.1 methyl-accepting chemotaxis protein TlpC -
  GCU76_RS02020 hxlB 378434..378991 (-) 558 WP_017696129.1 6-phospho-3-hexuloisomerase -
  GCU76_RS02025 hxlA 378997..379629 (-) 633 WP_017696130.1 3-hexulose-6-phosphate synthase -
  GCU76_RS02030 hxlR 379861..380223 (+) 363 WP_017696131.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14949.93 Da        Isoelectric Point: 4.8991

>NTDB_id=393957 GCU76_RS02005 WP_017696126.1 375560..375958(-) (nin/comJ) [Bacillus subtilis strain JAAA]
MIKSWKPQELSISYHQFTVFQKDSTPPVMDWTDEAIEKGYAAADGAISFEAQRNTKAFILLRLNSSETVSSYEKKVTVPF
HITENGIHIESIMSKRLSFDLPKGDYQLTCWTVPAEMSDLHADTYIIDAVSV

Nucleotide


Download         Length: 399 bp        

>NTDB_id=393957 GCU76_RS02005 WP_017696126.1 375560..375958(-) (nin/comJ) [Bacillus subtilis strain JAAA]
TTGATCAAATCATGGAAGCCGCAAGAACTTTCGATTTCATATCACCAATTTACTGTATTTCAAAAGGATTCTACACCTCC
TGTAATGGATTGGACTGACGAAGCGATTGAAAAAGGATATGCTGCGGCAGACGGAGCCATTTCCTTTGAGGCACAGCGAA
ATACAAAGGCCTTTATTCTTTTGCGCCTGAACAGTTCAGAAACAGTAAGCTCGTATGAAAAAAAAGTGACTGTTCCTTTT
CATATCACAGAAAACGGAATTCATATTGAAAGCATCATGTCTAAAAGACTATCCTTTGATCTGCCTAAAGGAGACTATCA
ATTGACATGCTGGACTGTGCCGGCTGAAATGTCAGATTTGCACGCCGACACTTATATTATTGATGCTGTTTCTGTGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

97.727

100

0.977

Multiple sequence alignment