Detailed information NTG0393883

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: FIU83_RS09595
• Genome accession: NZ_CP045417
• Coordinates: 2129433..2130284 (+)
• Length: 283 a.a.
• NCBI ID: WP_253939424.1
• Uniprot ID: A0A5P9IS83
• Organism: Halomonas sp. THAF5a
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2124433..2135284

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FIU83_RS09575 (FIU83_09585)	-	2125133..2125576 (+)	444	WP_152483848.1	MerR family DNA-binding transcriptional regulator	-
FIU83_RS09580 (FIU83_09590)	-	2125686..2127377 (+)	1692	WP_152483849.1	AMP-binding protein	-
FIU83_RS09585 (FIU83_09595)	-	2127641..2128219 (-)	579	WP_152483850.1	hypoxanthine-guanine phosphoribosyltransferase	-
FIU83_RS09590 (FIU83_09600)	nagZ	2128273..2129286 (-)	1014	WP_152483851.1	beta-N-acetylhexosaminidase	-
FIU83_RS09595 (FIU83_09605)	pilD	2129433..2130284 (+)	852	WP_253939424.1	A24 family peptidase	Machinery gene
FIU83_RS09600 (FIU83_09610)	coaE	2130321..2130935 (+)	615	WP_152483852.1	dephospho-CoA kinase	-
FIU83_RS09605 (FIU83_09615)	yacG	2130977..2131210 (+)	234	WP_152483853.1	DNA gyrase inhibitor YacG	-
FIU83_RS09610 (FIU83_09620)	-	2131207..2132082 (+)	876	WP_152483854.1	DNA replication terminus site-binding protein	-
FIU83_RS09615 (FIU83_09625)	-	2132098..2132421 (-)	324	WP_253939426.1	hypothetical protein	-
FIU83_RS09620 (FIU83_09630)	-	2132631..2133011 (-)	381	WP_152483855.1	histone-like nucleoid-structuring protein, MvaT/MvaU family	-
FIU83_RS09625 (FIU83_09635)	rpsA	2133321..2134997 (-)	1677	WP_152483856.1	30S ribosomal protein S1	-

Sequence

Protein

• Length: 283 a.a.
• Molecular weight: 30637.10 Da
• Isoelectric Point: 7.9243

>NTDB_id=393883 FIU83_RS09595 WP_253939424.1 2129433..2130284(+) (pilD) [Halomonas sp. THAF5a]
MLADLSPTLLWPLAAVLGLCLGSFLNVVITRLPVMLMQGWRAEAREALELPSEATPRFNLLTPRSLCPRCEAPIAWHDNI
PLLGWFKRRGRCASCAAPISPQYPLVELAGGVLALTVLALFGPTLEALFLLGACLALLAMAVIDLRTQLLPDLLTLPLLW
AGLLYQLLFQPLLLPSAVIGAMAGYLVLWSFYWLFKLVTGKEGMGYGDFKLLAALGAWLGWQFLPLVLILSAGAGALVGI
LIQLAVPRLRGAPLPFGPWLVMAGWLALLASEPLMALYTGLLY

Nucleotide

• Length: 852 bp

>NTDB_id=393883 FIU83_RS09595 WP_253939424.1 2129433..2130284(+) (pilD) [Halomonas sp. THAF5a]
TTGCTCGCCGACCTTTCTCCTACGCTGCTGTGGCCCCTCGCGGCCGTCCTCGGCCTGTGCCTGGGCAGTTTCCTCAACGT
GGTGATCACGCGACTGCCGGTGATGCTGATGCAGGGCTGGCGGGCCGAGGCCCGGGAGGCGCTGGAGCTCCCGTCAGAAG
CGACGCCGCGCTTCAACCTGCTGACGCCCCGCTCGCTCTGCCCGCGTTGCGAGGCGCCCATCGCCTGGCACGACAACATT
CCGCTGCTCGGCTGGTTCAAGCGTCGCGGGCGCTGCGCCAGCTGTGCGGCGCCCATCAGCCCCCAGTATCCGCTGGTCGA
ACTGGCCGGCGGCGTGCTCGCGCTGACGGTGCTGGCCCTCTTCGGCCCCACCCTCGAGGCGCTCTTCCTCCTCGGCGCCT
GCCTGGCGCTGCTGGCCATGGCAGTGATCGACCTGCGCACCCAGCTGCTGCCGGATCTGCTCACCCTCCCGCTGCTGTGG
GCGGGGCTGCTCTATCAGCTGCTCTTCCAGCCGCTGCTGCTGCCCTCGGCGGTGATCGGCGCCATGGCCGGCTACCTGGT
GCTATGGAGCTTCTATTGGCTGTTCAAGCTGGTCACCGGCAAGGAGGGCATGGGCTACGGTGACTTCAAGCTCCTGGCGG
CCCTCGGGGCCTGGCTGGGCTGGCAGTTCCTGCCCCTGGTGCTGATCCTCTCCGCCGGGGCCGGAGCGCTGGTGGGCATC
CTCATCCAGCTGGCGGTACCGCGCCTGCGCGGCGCCCCCCTGCCCTTCGGCCCCTGGCTGGTCATGGCCGGCTGGCTCGC
CCTGCTGGCGAGCGAGCCGTTGATGGCGCTCTATACCGGGCTGCTCTACTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (134-240)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (16-119)

3D structure

• AlphaFold DB: A0A5P9IS83

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.399	95.76	0.502
pilD	Vibrio campbellii strain DS40M4	47.143	98.94	0.466
pilD	Acinetobacter baumannii D1279779	46.043	98.233	0.452
pilD	Acinetobacter nosocomialis M2	46.043	98.233	0.452
pilD	Neisseria gonorrhoeae MS11	46.038	93.64	0.431