Detailed information NTG0393862

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: FIU84_RS13415
• Genome accession: NZ_CP045416
• Coordinates: 2822917..2825142 (-)
• Length: 741 a.a.
• NCBI ID: WP_152481466.1
• Uniprot ID: -
• Organism: Stutzerimonas frequens strain THAF7b
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2817917..2830142

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FIU84_RS13380 (FIU84_13425)	murB	2818307..2819326 (-)	1020	WP_063539894.1	UDP-N-acetylmuramate dehydrogenase	-
FIU84_RS13385 (FIU84_13430)	-	2819323..2819790 (-)	468	WP_063539895.1	low molecular weight protein-tyrosine-phosphatase	-
FIU84_RS13390 (FIU84_13435)	kdsB	2819792..2820556 (-)	765	WP_063539896.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
FIU84_RS13395 (FIU84_13440)	-	2820553..2820738 (-)	186	WP_011913743.1	Trm112 family protein	-
FIU84_RS13400 (FIU84_13445)	lpxK	2820784..2821788 (-)	1005	WP_152481465.1	tetraacyldisaccharide 4'-kinase	-
FIU84_RS13405 (FIU84_13450)	-	2821788..2822216 (-)	429	WP_013983259.1	biopolymer transporter ExbD	-
FIU84_RS13410 (FIU84_13455)	-	2822213..2822845 (-)	633	WP_013983260.1	MotA/TolQ/ExbB proton channel family protein	-
FIU84_RS13415 (FIU84_13460)	comA	2822917..2825142 (-)	2226	WP_152481466.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
FIU84_RS13420 (FIU84_13465)	-	2825289..2825804 (+)	516	WP_152481467.1	DUF2062 domain-containing protein	-
FIU84_RS13425 (FIU84_13470)	-	2825817..2827061 (-)	1245	WP_152481468.1	lipoprotein-releasing ABC transporter permease subunit	-
FIU84_RS13430 (FIU84_13475)	lolD	2827061..2827750 (-)	690	WP_063539901.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
FIU84_RS13435 (FIU84_13480)	-	2827758..2829005 (-)	1248	WP_102840158.1	lipoprotein-releasing ABC transporter permease subunit	-
FIU84_RS13440 (FIU84_13485)	-	2829039..2829674 (+)	636	WP_081253726.1	PilZ domain-containing protein	-
FIU84_RS13445 (FIU84_13490)	-	2829678..2829986 (+)	309	WP_152481469.1	phosphodiesterase	-

Sequence

Protein

• Length: 741 a.a.
• Molecular weight: 81035.39 Da
• Isoelectric Point: 9.8277

>NTDB_id=393862 FIU84_RS13415 WP_152481466.1 2822917..2825142(-) (comA) [Stutzerimonas frequens strain THAF7b]
MRTWMLALAAGLVLPRFLPALPAQWFWAALTAVGLLLLLRVRWVAPGLFLLGLSWACYQSQSAIDDRLPAPMDGRTFWIE
GRVVGLPSRIGNVVRFELDDIQSRHAGLPSKVRLSWYDGPLLQAGERWRLAARLKRPHGMVNPHSFDYEAWLLARRIGAT
GTIKAGERLTASRASDGWRDQLRARLMTVPASDRQGAIAALVVGDDSGLSRDDWQVLQDTGTVHLMVISGQHIGMLAGLL
YGLVALLARLGAWPRRLPWLPWACGLALSGALAYGWLAGFEVPVRRACLMVTVVLVWRLRFRHLGVWLPLLLALDGVLLI
DPLVTLQPGFWLSFGAVAVLALAFSGRLGSWRWWKALTRAQWAATLGLLPLLLALGLPISASGPLANLLAVPWVSLTVPF
ALLGTLLLPLGGAGEALLSMVGFSLALLFDVLAAIANWQPAWIAVGLPVWALALIGLGVLLLLLPAGIPLRSLGFVLLSP
LAFPPRVEVPEGRAQVWVLDVGQGLAVLVRTREHALLYDAGPKQGEFDTGERVVVPSLRTLGASRLDLLLLSHADNDHSG
GAEAVQRLLRVERVVSGEPSRHAPDLGAERCESGSTWQWNDVRFSLWQWQAAQDSNQQSCVLQIEANGERILLTGDIDQS
AEQAWLASEQQMSSHWLLLPHHGSRSSSSEPFLRGVAAQAALISRSLHNPFGHPHPSVTARLEAFDIKAYDTALHGAIRI
DLGGFSPPELQRSQRRFWREK

Nucleotide

• Length: 2226 bp

>NTDB_id=393862 FIU84_RS13415 WP_152481466.1 2822917..2825142(-) (comA) [Stutzerimonas frequens strain THAF7b]
ATGCGCACATGGATGCTTGCGCTCGCCGCGGGCCTGGTCCTGCCACGCTTCCTTCCAGCCTTGCCCGCGCAATGGTTCTG
GGCGGCGCTGACGGCTGTCGGACTGTTGCTGCTGCTGCGCGTCCGCTGGGTGGCGCCAGGCCTGTTTCTGCTGGGCTTGA
GCTGGGCCTGCTACCAGAGCCAGAGCGCCATCGACGACCGGTTGCCAGCGCCCATGGACGGTCGCACGTTCTGGATTGAG
GGGCGGGTAGTGGGGTTGCCCAGCCGTATCGGCAATGTGGTGCGCTTCGAGCTCGACGACATCCAATCGCGCCATGCCGG
GTTGCCATCGAAGGTGCGGCTGTCCTGGTATGACGGTCCGCTGCTACAAGCCGGCGAGCGCTGGCGGCTGGCGGCGCGAC
TGAAACGGCCACATGGCATGGTCAACCCGCATTCCTTCGATTACGAAGCCTGGTTGCTGGCGCGACGTATCGGCGCCACC
GGCACGATCAAGGCGGGTGAGCGCCTGACGGCGTCGAGGGCAAGCGACGGATGGCGCGATCAGCTTCGGGCGCGGCTCAT
GACCGTTCCGGCATCCGATCGGCAGGGCGCCATCGCGGCACTGGTGGTGGGTGACGATTCCGGTTTGAGCCGCGACGACT
GGCAGGTGCTGCAGGACACCGGCACCGTCCACCTGATGGTCATCTCCGGGCAGCACATCGGCATGTTGGCGGGGCTGCTC
TATGGTCTGGTCGCATTGCTGGCTCGCCTGGGTGCTTGGCCGCGGCGGTTGCCCTGGTTGCCCTGGGCGTGCGGGCTGGC
GTTAAGCGGTGCGCTGGCCTATGGCTGGCTGGCCGGTTTCGAGGTGCCGGTTCGTCGTGCCTGCCTGATGGTGACGGTGG
TGCTTGTCTGGCGGTTGCGCTTTCGCCATCTGGGCGTCTGGTTGCCGCTGCTGCTGGCGCTCGATGGCGTCCTGCTGATC
GATCCCCTGGTGACATTGCAGCCCGGGTTCTGGCTGTCGTTTGGAGCGGTGGCGGTTCTGGCATTGGCGTTCTCGGGGCG
GCTCGGTTCATGGCGCTGGTGGAAGGCTCTGACCCGGGCGCAGTGGGCGGCCACCCTCGGCCTGCTTCCGCTGTTGCTCG
CCCTGGGGCTGCCGATAAGCGCGAGCGGGCCGCTGGCCAATCTGCTTGCCGTGCCTTGGGTGAGTCTCACCGTGCCCTTT
GCGTTGCTTGGTACGCTGCTGCTGCCGCTGGGCGGGGCTGGCGAAGCGTTGCTGTCGATGGTGGGCTTTTCGCTGGCACT
GCTGTTCGACGTGCTGGCAGCGATAGCCAATTGGCAACCCGCCTGGATTGCGGTCGGCCTGCCCGTCTGGGCTCTGGCGT
TAATCGGGCTGGGCGTCCTGTTGCTGTTGCTGCCAGCCGGTATTCCGCTGCGTTCGCTGGGCTTTGTGCTGCTGTCGCCG
CTGGCATTCCCGCCTCGTGTCGAGGTCCCGGAGGGCCGAGCGCAGGTCTGGGTGCTGGATGTGGGCCAGGGCCTGGCGGT
GCTGGTGCGCACCCGCGAGCATGCACTGCTTTACGATGCCGGGCCGAAGCAGGGCGAGTTCGACACAGGCGAGCGGGTGG
TGGTCCCATCGCTCCGCACCCTTGGCGCGAGCCGGTTGGACCTGCTGTTGCTTAGCCATGCCGATAATGATCATTCGGGC
GGTGCGGAGGCGGTCCAGCGGCTGCTCCGGGTCGAGCGGGTGGTCAGTGGCGAGCCGTCTCGCCACGCGCCGGATCTGGG
CGCCGAACGTTGCGAAAGCGGTAGCACTTGGCAATGGAACGATGTGCGCTTCAGTCTGTGGCAATGGCAGGCGGCGCAGG
ACAGCAACCAGCAGTCCTGCGTGCTGCAGATCGAGGCCAACGGTGAGCGAATCCTGCTCACCGGTGACATTGACCAGTCC
GCCGAGCAGGCTTGGCTGGCAAGTGAGCAGCAGATGTCATCGCACTGGCTGCTGCTGCCCCATCACGGCAGCCGCAGCTC
CTCGTCGGAGCCGTTTCTGCGTGGCGTGGCCGCGCAAGCCGCGCTGATCTCGCGAAGTCTGCACAATCCGTTCGGCCACC
CGCACCCGAGCGTGACCGCGCGGCTCGAGGCGTTCGATATCAAGGCCTACGACACCGCGTTGCATGGCGCCATCCGGATC
GATCTGGGCGGTTTTTCGCCGCCAGAGCTGCAACGCTCGCAGCGACGATTCTGGCGGGAAAAATGA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (201-464)

• Metallo-beta-lactamase superfamily (Lactamase_B) (500-653)

• Domain of unknown function (DUF4131) (DUF4131) (23-168)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	66.246	96.356	0.638
comA	Ralstonia pseudosolanacearum GMI1000	36.328	100	0.377