Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   STND_RS03205 Genome accession   NC_017563
Coordinates   593304..593900 (+) Length   198 a.a.
NCBI ID   WP_014608122.1    Uniprot ID   -
Organism   Streptococcus thermophilus ND03     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 588304..598900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STND_RS03180 (STND_0609) - 588440..588652 (+) 213 WP_011680924.1 alpha/beta fold hydrolase -
  STND_RS03185 (STND_0610) - 588900..589091 (+) 192 WP_011227003.1 alpha/beta fold hydrolase -
  STND_RS03190 (STND_0611) - 589264..590118 (+) 855 WP_024009803.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  STND_RS03195 (STND_0612) - 590122..590958 (+) 837 WP_014608120.1 NAD(P)H-hydrate dehydratase -
  STND_RS03200 (STND_0613) pbp2b 591080..593194 (+) 2115 WP_014608121.1 penicillin-binding protein PBP2B -
  STND_RS03205 (STND_0614) recR 593304..593900 (+) 597 WP_014608122.1 recombination mediator RecR Machinery gene
  STND_RS11565 - 594041..594837 (+) 797 Protein_577 PRD domain-containing protein -
  STND_RS03220 (STND_0617) ybeY 595056..595553 (+) 498 WP_002950224.1 rRNA maturation RNase YbeY -
  STND_RS03225 (STND_0618) - 595534..595938 (+) 405 WP_002946201.1 diacylglycerol kinase family protein -
  STND_RS03230 (STND_0619) era 595957..596856 (+) 900 WP_011680930.1 GTPase Era -
  STND_RS03235 (STND_0620) mutM 596903..597724 (+) 822 WP_011225698.1 DNA-formamidopyrimidine glycosylase -
  STND_RS03240 (STND_0621) coaE 597721..598314 (+) 594 WP_041827324.1 dephospho-CoA kinase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21802.00 Da        Isoelectric Point: 4.5326

>NTDB_id=39384 STND_RS03205 WP_014608122.1 593304..593900(+) (recR) [Streptococcus thermophilus ND03]
MLYPTPIAKLIDSFSKFPGIGAKTATRLAFYTISMSDEDVNDFAKNLLAAKRELTYCSVCGRLTDDDPCIICTDETRDRT
KILVVEDSKDVSAMEKIQEYRGLYHVLQGLISPMNGVGPDDINLKSLITRLMDSEVDEVIIATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=39384 STND_RS03205 WP_014608122.1 593304..593900(+) (recR) [Streptococcus thermophilus ND03]
ATGCTTTATCCTACTCCAATTGCTAAACTGATTGATAGTTTTTCAAAATTTCCAGGAATTGGGGCTAAGACGGCGACACG
TCTGGCTTTCTATACCATTAGCATGTCTGATGAAGATGTCAATGATTTTGCAAAAAATCTTTTAGCAGCAAAACGTGAGT
TGACCTATTGTTCAGTTTGTGGTCGCTTGACTGATGATGACCCATGTATTATTTGTACGGATGAAACTAGAGACCGTACT
AAGATTTTGGTTGTTGAGGACTCCAAAGATGTTTCTGCTATGGAAAAGATTCAGGAATATCGTGGTCTCTACCATGTGCT
TCAAGGGCTTATCTCCCCTATGAATGGTGTTGGACCAGATGATATTAATTTAAAAAGTTTGATTACCCGTCTTATGGATA
GCGAGGTTGACGAGGTCATCATCGCAACTAATGCAACGGCCGATGGTGAGGCAACCTCTATGTATATTTCACGGGTCCTC
AAACCTGCAGGTATTAAGGTGACCCGCCTAGCGCGTGGGCTGGCTGTTGGTTCTGACATCGAGTACGCTGATGAAGTAAC
CTTGCTAAGAGCCATCGAGAATCGAACAGAACTGTAG

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(39-78)

Toprim domain (Toprim_4)

(81-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

86.364

100

0.864
  recR Bacillus subtilis subsp. subtilis str. 168

63.131

100

0.631
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

47.692

98.485

0.47

Multiple sequence alignment