Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   FIU87_RS13415 Genome accession   NZ_CP045403
Coordinates   2555837..2557543 (-) Length   568 a.a.
NCBI ID   WP_152445059.1    Uniprot ID   -
Organism   Bacillus sp. THAF10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2550837..2562543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIU87_RS13390 (FIU87_13780) - 2551758..2551991 (+) 234 WP_152445054.1 DUF2627 domain-containing protein -
  FIU87_RS13395 (FIU87_13785) - 2552175..2552909 (-) 735 WP_152445055.1 glycerophosphodiester phosphodiesterase -
  FIU87_RS13400 (FIU87_13790) - 2553012..2553164 (+) 153 WP_152445056.1 YycC family protein -
  FIU87_RS13405 (FIU87_13795) spo0A 2553233..2554027 (-) 795 WP_152445057.1 sporulation transcription factor Spo0A Regulator
  FIU87_RS13410 (FIU87_13800) spoIVB 2554370..2555662 (-) 1293 WP_152445058.1 SpoIVB peptidase -
  FIU87_RS13415 (FIU87_13805) recN 2555837..2557543 (-) 1707 WP_152445059.1 DNA repair protein RecN Machinery gene
  FIU87_RS13420 (FIU87_13810) argR 2557565..2558014 (-) 450 WP_152445060.1 transcriptional regulator ArgR -
  FIU87_RS13425 (FIU87_13815) - 2558407..2559243 (-) 837 WP_152445061.1 TlyA family RNA methyltransferase -
  FIU87_RS13430 (FIU87_13820) dxs 2559250..2561142 (-) 1893 WP_152445062.1 1-deoxy-D-xylulose-5-phosphate synthase -
  FIU87_RS13435 (FIU87_13825) - 2561242..2562108 (-) 867 WP_152446567.1 polyprenyl synthetase family protein -
  FIU87_RS13440 (FIU87_13830) - 2562136..2562372 (-) 237 WP_152445063.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 568 a.a.        Molecular weight: 64154.74 Da        Isoelectric Point: 4.8528

>NTDB_id=393805 FIU87_RS13415 WP_152445059.1 2555837..2557543(-) (recN) [Bacillus sp. THAF10]
MIAELTIKNFAIIESLSISFEKGLTVLTGETGAGKSIIIDAIHLLAGGRGSHEYVRFGEKRAELEGLFLLEDESHPAYHV
CGELGIDIDDSMVVLRREIHASGKSVCRVNGKLVTIALLREVGQTLVDIHGQHEHQELMDADLHLPLLDQYGGKSVQKEL
QSYSEVYDTYKDVEKRLLELTDNEQKMAHRLDLLQFQAEEINKAELNINEEEELLAERKKISNYERLYQSLNNCYHALRG
EQKGLDWVGQAMSESEGLEEIDSELKDINEVISNAFYQLEELSYKIRDDIDQLEYDPNRLDFIESRLNEIKQLKRKYGST
VAEVLEYGAKIEEELETLQNRDSHIHQLQQSLHSLKEDLLLEAKTLTDARRKAAQKLMKSIHKELKDLYLEKAIFDVNIE
SRINKSTDEFSFSKNGVDVVEFYLTTNPGEPLKPMAKVASGGELSRIMLAIKSIFSKHQGVTSIIFDEVDTGVSGRVAQA
IAEKIYQVSVDSQVLCISHLPQVAAMSDTHLFISKEVSGERTKTKVSELNKDEKISEIGRMISGVEITSLTKEHARELLE
IAGSIKQP

Nucleotide


Download         Length: 1707 bp        

>NTDB_id=393805 FIU87_RS13415 WP_152445059.1 2555837..2557543(-) (recN) [Bacillus sp. THAF10]
ATGATTGCTGAATTGACAATCAAAAATTTTGCTATTATAGAATCTCTCTCTATATCCTTTGAAAAAGGTTTAACCGTATT
AACGGGTGAAACAGGAGCTGGGAAATCCATTATCATTGATGCGATTCACTTACTTGCGGGCGGGCGAGGTTCTCATGAAT
ATGTCCGCTTTGGTGAAAAAAGAGCAGAACTGGAAGGTTTATTCCTTTTGGAAGATGAGAGTCATCCAGCCTATCATGTT
TGCGGGGAACTTGGCATTGATATAGATGACAGCATGGTTGTGCTACGAAGAGAAATTCATGCGAGTGGAAAAAGCGTTTG
CCGAGTCAACGGAAAGCTTGTTACCATCGCTTTATTACGAGAAGTGGGACAAACCCTTGTTGATATTCATGGGCAGCATG
AGCACCAAGAGTTAATGGATGCTGATCTACATCTGCCTCTTTTAGATCAATATGGAGGGAAAAGTGTCCAAAAGGAACTT
CAATCCTATTCAGAAGTATACGATACATATAAAGATGTGGAAAAACGTCTGCTTGAGCTGACGGATAATGAGCAAAAAAT
GGCTCACCGCCTTGACCTGTTGCAATTTCAAGCAGAAGAAATAAACAAGGCGGAGCTTAATATAAATGAAGAAGAGGAAC
TACTTGCAGAACGAAAGAAAATTAGTAACTATGAACGCTTATACCAGTCATTAAACAACTGCTACCATGCACTTCGTGGG
GAGCAAAAGGGCCTGGATTGGGTCGGTCAAGCTATGTCTGAATCAGAGGGTTTAGAGGAAATTGATTCCGAGTTAAAGGA
TATTAACGAGGTGATTTCCAATGCCTTTTATCAATTAGAAGAGCTTTCCTACAAAATTAGAGATGATATAGACCAGCTTG
AATATGATCCTAACCGTCTTGACTTTATCGAGAGCAGGCTTAACGAAATTAAACAGCTGAAACGAAAGTATGGAAGTACC
GTTGCTGAAGTGTTGGAGTATGGTGCAAAAATTGAGGAAGAGCTCGAAACCTTACAAAACAGAGATTCTCATATCCATCA
GCTTCAACAATCGCTACATTCTCTAAAGGAAGACCTTTTATTAGAAGCAAAAACACTAACAGATGCTCGTAGGAAAGCTG
CGCAGAAACTGATGAAAAGCATCCATAAAGAGCTTAAGGATTTGTATTTAGAAAAAGCTATTTTTGATGTTAATATCGAA
AGTCGTATCAATAAAAGTACAGATGAATTTTCATTTTCAAAAAATGGAGTAGACGTCGTGGAGTTTTACTTAACAACCAA
CCCAGGGGAACCATTAAAGCCAATGGCAAAGGTGGCTTCAGGTGGAGAATTATCGCGAATCATGCTTGCGATCAAAAGCA
TCTTTTCCAAGCATCAGGGTGTTACCTCGATTATTTTTGATGAAGTGGATACAGGGGTTAGTGGTCGTGTGGCCCAAGCT
ATTGCAGAAAAGATTTATCAGGTTTCAGTGGATTCCCAAGTTCTTTGTATTTCCCATCTTCCGCAGGTCGCTGCCATGTC
TGATACACATTTGTTTATCAGCAAGGAAGTATCTGGTGAAAGAACAAAAACTAAGGTTAGTGAATTAAATAAAGATGAAA
AAATCAGCGAAATTGGCCGCATGATATCTGGAGTGGAAATTACCTCCCTAACAAAAGAACATGCACGTGAGCTTCTAGAA
ATCGCTGGAAGCATCAAACAGCCTTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

59.059

100

0.597

Multiple sequence alignment