Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FIU87_RS00580 Genome accession   NZ_CP045403
Coordinates   112520..113896 (+) Length   458 a.a.
NCBI ID   WP_152442812.1    Uniprot ID   A0A5P9HGM0
Organism   Bacillus sp. THAF10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 107520..118896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIU87_RS00560 (FIU87_00580) - 107716..108177 (+) 462 WP_152442808.1 CtsR family transcriptional regulator -
  FIU87_RS00565 (FIU87_00585) - 108190..108738 (+) 549 WP_152442809.1 UvrB/UvrC motif-containing protein -
  FIU87_RS00570 (FIU87_00590) - 108739..109803 (+) 1065 WP_152442810.1 protein arginine kinase -
  FIU87_RS00575 (FIU87_00595) clpC 109826..112264 (+) 2439 WP_152442811.1 ATP-dependent protease ATP-binding subunit ClpC Regulator
  FIU87_RS00580 (FIU87_00600) radA 112520..113896 (+) 1377 WP_152442812.1 DNA repair protein RadA Machinery gene
  FIU87_RS00585 (FIU87_00605) disA 113899..114969 (+) 1071 WP_152442813.1 DNA integrity scanning diadenylate cyclase DisA -
  FIU87_RS00590 (FIU87_00610) - 115067..116158 (+) 1092 WP_152442814.1 PIN/TRAM domain-containing protein -
  FIU87_RS00595 (FIU87_00615) ispD 116265..116957 (+) 693 WP_152442815.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  FIU87_RS00600 (FIU87_00620) ispF 116957..117433 (+) 477 WP_152442816.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49946.51 Da        Isoelectric Point: 7.3933

>NTDB_id=393781 FIU87_RS00580 WP_152442812.1 112520..113896(+) (radA) [Bacillus sp. THAF10]
MAKRKTKFMCKECGYESPKWMGKCPGCHAWNTMTEELEESRTPRRGGFTTSVSTLAKKAESITTVEKLNETRIHTDMEEC
NRVLGGGLVQGSLVLIGGDPGIGKSTLLLQVCCQLALKKHRVLYISGEESVQQTKLRADRLGVQAEELFVLSETDFELVA
KAVDDVQPTLLVVDSIQTVYHPAVTSAPGSVSQVRECTAELMRIAKTKNIAVFIVGHVTKEGSIAGPRLLEHMVDTVLYF
EGERHHTYRILRSVKNRFGSTNEIGIFEMKEEGLTEVKNPSEIFLEERSKGAAGSTVVASMEGTRPVLVEIQALISPTGY
GNPRRMATGIDHNRVSLIMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAVAVSIASSFRNQTSEPTDVVIGEVGLT
GEIRRVSRIEQRVQEAAKLGFKRVIIPSKNLGGWTAPEGISVIGVATIDQALQYTLGG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=393781 FIU87_RS00580 WP_152442812.1 112520..113896(+) (radA) [Bacillus sp. THAF10]
ATGGCAAAAAGAAAGACGAAATTCATGTGTAAGGAATGTGGCTATGAGTCTCCCAAATGGATGGGGAAATGTCCAGGGTG
TCATGCATGGAATACGATGACAGAAGAGCTAGAGGAATCCAGGACCCCAAGAAGGGGAGGGTTTACCACTTCTGTTTCGA
CGCTTGCAAAAAAAGCAGAATCCATAACCACAGTAGAGAAGCTAAATGAAACAAGAATTCATACAGATATGGAAGAGTGT
AATCGCGTGCTTGGTGGAGGACTTGTTCAAGGCTCCCTCGTTCTTATTGGGGGAGATCCCGGTATTGGCAAATCTACCTT
ATTGCTTCAGGTATGCTGTCAGCTAGCATTAAAGAAGCATCGCGTTCTTTATATTTCAGGAGAAGAATCTGTTCAACAGA
CAAAGCTACGTGCAGACCGACTAGGCGTGCAAGCGGAAGAACTGTTTGTGTTATCAGAGACGGACTTTGAGCTAGTCGCA
AAAGCGGTGGATGATGTACAGCCTACGTTACTCGTAGTAGACTCCATCCAAACAGTCTATCATCCTGCTGTTACCTCCGC
ACCAGGAAGTGTATCTCAGGTAAGGGAATGTACCGCAGAATTGATGCGCATCGCCAAAACAAAAAATATCGCTGTCTTTA
TAGTTGGACATGTGACAAAAGAGGGTTCAATAGCGGGACCTCGACTTTTAGAACATATGGTGGATACTGTTTTGTATTTT
GAAGGGGAACGACATCATACATACCGGATACTTCGGTCCGTAAAAAATCGATTCGGTTCCACAAATGAGATAGGAATTTT
TGAAATGAAGGAAGAAGGATTAACAGAGGTGAAAAATCCTTCTGAAATTTTCTTAGAAGAGCGTTCTAAAGGAGCGGCGG
GGTCGACCGTGGTTGCCTCAATGGAAGGTACCCGACCAGTGCTTGTGGAAATTCAAGCGCTCATTTCGCCAACAGGCTAC
GGAAACCCAAGAAGAATGGCAACAGGCATTGATCATAACAGAGTCTCGTTAATTATGGCAGTGTTGGAAAAAAGGGTTGG
TCTGCTTCTACAAAACCAGGATGCCTATTTAAAGGTGGCAGGCGGGGTAAAGCTGGATGAACCTGCGATCGATTTGGCTG
TGGCTGTGAGTATTGCTTCAAGCTTTCGAAATCAAACCTCTGAACCAACCGATGTAGTCATTGGAGAGGTAGGCTTAACA
GGAGAAATACGGCGAGTATCTCGTATAGAACAAAGAGTGCAGGAAGCAGCCAAACTAGGCTTTAAGCGTGTTATCATCCC
TTCCAAAAATTTAGGAGGGTGGACAGCTCCAGAAGGGATTAGCGTGATAGGTGTTGCAACAATTGACCAGGCTCTTCAAT
ATACTCTAGGGGGATAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(73-222)

Subunit ChlI of Mg-chelatase (ChlI)

(364-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P9HGM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

74.51

100

0.747
  radA Streptococcus pneumoniae Rx1

62.031

98.908

0.614
  radA Streptococcus pneumoniae D39

62.031

98.908

0.614
  radA Streptococcus pneumoniae R6

62.031

98.908

0.614
  radA Streptococcus pneumoniae TIGR4

62.031

98.908

0.614
  radA Streptococcus mitis NCTC 12261

62.031

98.908

0.614
  radA Streptococcus mitis SK321

62.031

98.908

0.614

Multiple sequence alignment