Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   FIU87_RS00020 Genome accession   NZ_CP045403
Coordinates   3069..4190 (+) Length   373 a.a.
NCBI ID   WP_152442739.1    Uniprot ID   A0A5P9HGN0
Organism   Bacillus sp. THAF10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..9190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIU87_RS00005 (FIU87_00005) dnaA 1..1347 (+) 1347 WP_152442736.1 chromosomal replication initiator protein DnaA -
  FIU87_RS00010 (FIU87_00010) dnaN 1542..2678 (+) 1137 WP_152442737.1 DNA polymerase III subunit beta -
  FIU87_RS00015 (FIU87_00015) yaaA 2829..3041 (+) 213 WP_152442738.1 S4 domain-containing protein YaaA -
  FIU87_RS00020 (FIU87_00020) recF 3069..4190 (+) 1122 WP_152442739.1 DNA replication/repair protein RecF Machinery gene
  FIU87_RS00025 (FIU87_00025) remB 4201..4449 (+) 249 WP_152442740.1 extracellular matrix regulator RemB -
  FIU87_RS00030 (FIU87_00030) gyrB 4519..6444 (+) 1926 WP_152446349.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  FIU87_RS00035 (FIU87_00035) gyrA 6667..9174 (+) 2508 WP_152442741.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 373 a.a.        Molecular weight: 42916.20 Da        Isoelectric Point: 7.2923

>NTDB_id=393777 FIU87_RS00020 WP_152442739.1 3069..4190(+) (recF) [Bacillus sp. THAF10]
MYIEELSLKNYRNYDEMHTVFEDGVNVILGENAQGKTNVMESIYVLAMAKSHRTANDKDLIKWDEEYGKIEGRIHKRNGP
LPMQLVISKKGKKAKINHIEQSRLSQYIGSMNIVMFAPEDLTLVKGSPQVRRRFIDMELGQVSPRYMHDLSRYQKVLQQR
NHYLKLLQTKKQKDQTMLLVLTEQLIELAASVTEKREEFVRLLESWARPIHKSISRGLEELSVIYKPSIDYVSETANLSK
MIEAYNEKFDKIKDREIERGLTLFGPHRDDLLFQVNGKDVQTFGSQGQQRTTALSLKLAEIDLIYSEVGEYPILLLDDVL
SELDDYRQSHLLNTIQGKVQTFVTTTSVDGIDHQTLKQAATYEVVSGSIMKKG

Nucleotide


Download         Length: 1122 bp        

>NTDB_id=393777 FIU87_RS00020 WP_152442739.1 3069..4190(+) (recF) [Bacillus sp. THAF10]
TTGTATATAGAAGAACTATCACTAAAAAACTATCGCAATTATGATGAGATGCACACCGTTTTTGAAGACGGTGTGAATGT
TATTTTAGGAGAAAATGCGCAAGGGAAAACTAACGTGATGGAATCCATCTATGTTTTGGCCATGGCAAAATCCCACCGAA
CGGCCAATGATAAAGATCTTATCAAGTGGGATGAAGAGTATGGTAAAATAGAGGGTAGGATACATAAACGGAATGGACCG
CTGCCTATGCAGCTTGTGATAAGCAAAAAAGGGAAAAAAGCAAAAATTAATCATATCGAGCAATCGCGATTAAGCCAATA
TATCGGTAGCATGAATATCGTAATGTTTGCTCCAGAGGATCTGACGCTTGTAAAAGGGAGCCCGCAAGTGCGCAGGCGTT
TTATCGACATGGAGCTTGGACAAGTATCGCCAAGGTATATGCATGATCTTTCTCGGTACCAAAAAGTGCTGCAGCAACGA
AATCACTATTTAAAGCTATTGCAAACCAAAAAGCAAAAGGATCAAACCATGCTGTTGGTGCTAACAGAACAGCTAATTGA
GCTTGCGGCAAGTGTAACAGAAAAACGAGAGGAGTTTGTCAGACTCCTTGAGAGTTGGGCCAGGCCCATTCATAAAAGTA
TTAGCAGAGGCTTAGAGGAATTATCGGTTATCTATAAACCATCCATCGATTATGTATCAGAAACTGCAAACTTGTCGAAA
ATGATAGAAGCATATAACGAAAAGTTTGATAAAATAAAAGATAGAGAAATTGAAAGAGGTTTAACCCTTTTTGGTCCTCA
TCGTGATGACCTTCTCTTTCAAGTGAACGGAAAGGATGTCCAAACATTTGGCTCACAAGGACAACAAAGAACCACTGCAC
TATCCCTTAAGCTAGCGGAAATCGACCTGATTTATTCGGAAGTAGGGGAATATCCCATATTGCTGTTGGATGATGTGTTG
TCAGAGCTCGATGATTATAGACAATCCCACTTACTGAATACGATTCAAGGAAAAGTTCAAACATTTGTTACGACAACAAG
TGTCGATGGCATTGACCATCAAACATTAAAGCAAGCGGCTACCTATGAGGTCGTGAGCGGCTCCATTATGAAAAAAGGGT
GA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-347)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P9HGN0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

70.35

99.464

0.7

Multiple sequence alignment