Detailed information NTG0393767

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: FIU88_RS09960
• Genome accession: NZ_CP045399
• Coordinates: 2167377..2168228 (+)
• Length: 283 a.a.
• NCBI ID: WP_172977703.1
• Uniprot ID: A0A5P9HEC9
• Organism: Halomonas sp. THAF12
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2162377..2173228

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FIU88_RS09940 (FIU88_09965)	-	2163213..2163656 (+)	444	WP_152479113.1	MerR family DNA-binding transcriptional regulator	-
FIU88_RS09945 (FIU88_09970)	-	2163742..2165433 (+)	1692	WP_152479114.1	AMP-binding protein	-
FIU88_RS09950 (FIU88_09975)	-	2165561..2166139 (-)	579	WP_016856457.1	hypoxanthine-guanine phosphoribosyltransferase	-
FIU88_RS09955 (FIU88_09980)	nagZ	2166189..2167202 (-)	1014	WP_152479115.1	beta-N-acetylhexosaminidase	-
FIU88_RS09960 (FIU88_09985)	pilD	2167377..2168228 (+)	852	WP_172977703.1	A24 family peptidase	Machinery gene
FIU88_RS09965 (FIU88_09990)	coaE	2168230..2168859 (+)	630	WP_152479116.1	dephospho-CoA kinase	-
FIU88_RS09970 (FIU88_09995)	yacG	2168902..2169132 (+)	231	WP_035593542.1	DNA gyrase inhibitor YacG	-
FIU88_RS09975 (FIU88_10000)	-	2169136..2170008 (+)	873	WP_152479117.1	DNA replication terminus site-binding protein	-
FIU88_RS09980 (FIU88_10005)	-	2170049..2170327 (-)	279	WP_016856463.1	hypothetical protein	-
FIU88_RS09985 (FIU88_10010)	-	2170677..2171471 (+)	795	WP_152479118.1	AraC family transcriptional regulator	-
FIU88_RS09990 (FIU88_10015)	-	2171568..2171945 (-)	378	WP_152479119.1	histone-like nucleoid-structuring protein, MvaT/MvaU family	-

Sequence

Protein

• Length: 283 a.a.
• Molecular weight: 30759.00 Da
• Isoelectric Point: 6.2256

>NTDB_id=393767 FIU88_RS09960 WP_172977703.1 2167377..2168228(+) (pilD) [Halomonas sp. THAF12]
MPVDLPPVLLWPLAAVIGLCLGSFLNVVITRLPVMLMREWRAEAREALELEAEDTPTFHLAEPRSMCPRCEAPIAWHDNI
PLLGWLKRRGRCAHCDTRISPQYPLVELAGALLTLAVTALFGPTLEGLFILGACLSLLAMAAIDLRTQLLPDALTLPLLW
AGLLYQLLFQPLQLPGAVIGAMAGYLSLWGFYWLFKLVTGKEGMGYGDFKLFAALGAWLGWTFLPMILILAAGAGAIVGV
IVQLAVPRLRGAPMPFGPWLAAAGWIALLLGEPLMATYLNLVL

Nucleotide

• Length: 852 bp

>NTDB_id=393767 FIU88_RS09960 WP_172977703.1 2167377..2168228(+) (pilD) [Halomonas sp. THAF12]
TTGCCTGTCGATCTTCCCCCTGTGCTGCTGTGGCCGCTGGCTGCGGTGATCGGTCTGTGCCTCGGCAGTTTCCTCAACGT
GGTGATCACCCGCCTGCCGGTCATGCTGATGCGCGAGTGGCGTGCCGAGGCCCGCGAGGCGCTGGAGCTCGAGGCCGAAG
ACACCCCGACCTTCCACCTGGCCGAGCCGCGCTCGATGTGTCCGCGCTGCGAGGCGCCGATCGCCTGGCACGACAACATC
CCGCTGCTCGGCTGGCTGAAGCGCCGCGGGCGCTGCGCCCACTGCGATACGCGCATCAGCCCCCAGTACCCGCTGGTGGA
GCTGGCCGGCGCCCTGCTGACGCTGGCGGTGACGGCGCTGTTCGGCCCTACCCTGGAGGGGCTGTTCATCCTCGGCGCCT
GCCTGAGCCTGCTGGCGATGGCGGCGATCGATCTGCGCACCCAGCTGCTGCCGGACGCGCTGACCCTGCCGCTGCTGTGG
GCCGGCCTGCTGTACCAGCTACTGTTTCAGCCGCTGCAGCTGCCGGGCGCGGTGATCGGCGCCATGGCCGGCTATCTCTC
GCTGTGGGGCTTCTACTGGCTGTTCAAGCTGGTCACCGGCAAGGAAGGCATGGGCTACGGCGACTTCAAGCTGTTCGCCG
CGCTGGGCGCCTGGCTCGGCTGGACCTTCCTGCCGATGATCCTGATCCTGGCCGCCGGTGCCGGCGCCATCGTCGGCGTG
ATCGTTCAGCTGGCCGTACCGCGCCTGCGCGGCGCGCCGATGCCCTTCGGCCCCTGGCTCGCCGCGGCCGGCTGGATCGC
GCTGCTGCTCGGCGAACCGCTGATGGCCACCTACCTGAATCTGGTGCTGTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (16-119)

• Type IV leader peptidase family (Peptidase_A24) (134-240)

3D structure

• AlphaFold DB: A0A5P9HEC9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.574	96.113	0.505
pilD	Acinetobacter nosocomialis M2	47.253	96.466	0.456
pilD	Vibrio campbellii strain DS40M4	46.071	98.94	0.456
pilD	Acinetobacter baumannii D1279779	46.886	96.466	0.452
pilD	Neisseria gonorrhoeae MS11	45.185	95.406	0.431