Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FIU93_RS20570 Genome accession   NZ_CP045380
Coordinates   4496591..4497148 (-) Length   185 a.a.
NCBI ID   WP_152506582.1    Uniprot ID   -
Organism   Labrenzia sp. THAF35     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4491591..4502148
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIU93_RS20555 (FIU93_20750) - 4492407..4493552 (+) 1146 WP_152506580.1 zinc ABC transporter substrate-binding protein -
  FIU93_RS20560 (FIU93_20755) - 4493632..4495521 (-) 1890 WP_209010186.1 L,D-transpeptidase family protein -
  FIU93_RS20565 (FIU93_20760) - 4496053..4496529 (+) 477 WP_022998705.1 hypothetical protein -
  FIU93_RS20570 (FIU93_20765) ssb 4496591..4497148 (-) 558 WP_152506582.1 single-stranded DNA-binding protein Machinery gene
  FIU93_RS20575 (FIU93_20770) uvrA 4497733..4500663 (+) 2931 WP_022998707.1 excinuclease ABC subunit UvrA -
  FIU93_RS20580 (FIU93_20775) - 4500908..4501057 (+) 150 WP_006933294.1 DUF1127 domain-containing protein -
  FIU93_RS20585 (FIU93_20780) - 4501889..4502038 (+) 150 WP_006933293.1 DUF1127 domain-containing protein -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 19053.68 Da        Isoelectric Point: 5.2868

>NTDB_id=393732 FIU93_RS20570 WP_152506582.1 4496591..4497148(-) (ssb) [Labrenzia sp. THAF35]
MAGSVNKVILVGNLGADPEIRRTQDGRPIANLRIATSESWRDRNTGERREKTEWHRVVIFNDGLCKVAEQYLRKGSKVYL
EGQLQTRKWQDQSGQDRYSTEIVLQGFNSNLTMLDGRGEGGGASGGLPDYGNDSQGGGGGGFGGGGSGSGGNFGGGYGGG
SSSGGGYGGPSGGGGGGPMDDEIPF

Nucleotide


Download         Length: 558 bp        

>NTDB_id=393732 FIU93_RS20570 WP_152506582.1 4496591..4497148(-) (ssb) [Labrenzia sp. THAF35]
ATGGCGGGCAGCGTCAACAAAGTAATTTTGGTCGGCAATCTGGGAGCAGACCCGGAAATCCGCCGTACGCAGGATGGCCG
CCCGATCGCCAATCTCCGGATTGCGACGTCGGAATCCTGGCGAGACCGCAACACCGGTGAGCGTCGTGAAAAGACGGAGT
GGCACCGCGTCGTGATCTTCAACGACGGTCTTTGCAAAGTTGCGGAGCAATATCTGCGCAAGGGATCAAAGGTTTATCTC
GAAGGCCAGCTTCAGACCCGCAAATGGCAGGATCAGTCCGGTCAGGACCGGTACTCCACCGAGATCGTGCTGCAGGGTTT
CAACTCCAACCTGACCATGCTTGACGGCCGCGGCGAAGGTGGCGGTGCATCCGGCGGTCTTCCCGATTACGGCAATGACT
CACAAGGCGGTGGCGGAGGTGGCTTCGGCGGCGGCGGTTCCGGTTCCGGCGGGAATTTCGGTGGTGGCTATGGCGGCGGT
TCCAGCAGCGGTGGCGGTTACGGCGGTCCGTCCGGCGGCGGTGGTGGTGGCCCCATGGACGACGAAATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.668

100

0.497
  ssb Vibrio cholerae strain A1552

50.549

98.378

0.497

Multiple sequence alignment