Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   FIU98_RS05025 Genome accession   NZ_CP045359
Coordinates   1098518..1100092 (-) Length   524 a.a.
NCBI ID   WP_152487972.1    Uniprot ID   -
Organism   Pseudomonas sp. THAF42     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1093518..1105092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIU98_RS05000 (FIU98_04955) pilV 1094179..1094760 (-) 582 WP_172979129.1 type IV pilus modification protein PilV -
  FIU98_RS05005 - 1094769..1095338 (-) 570 WP_152487969.1 GspH/FimT family protein -
  FIU98_RS25180 - 1095420..1095932 (-) 513 WP_152487970.1 GspH/FimT family pseudopilin -
  FIU98_RS05015 (FIU98_04960) thiO 1096038..1097138 (+) 1101 WP_152487971.1 glycine oxidase ThiO -
  FIU98_RS05020 (FIU98_04965) pilR 1097175..1098515 (-) 1341 WP_134678120.1 sigma-54 dependent transcriptional regulator Regulator
  FIU98_RS05025 (FIU98_04970) pilS 1098518..1100092 (-) 1575 WP_152487972.1 PAS domain-containing sensor histidine kinase Regulator
  FIU98_RS05030 (FIU98_04975) - 1100100..1100336 (-) 237 WP_152487973.1 PP0621 family protein -
  FIU98_RS05035 (FIU98_04980) - 1100475..1101467 (-) 993 WP_134678118.1 outer membrane protein assembly factor BamD -
  FIU98_RS05040 (FIU98_04985) rluD 1101740..1102714 (+) 975 WP_047590232.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  FIU98_RS05045 (FIU98_04990) pgeF 1102711..1103442 (+) 732 WP_152487974.1 peptidoglycan editing factor PgeF -
  FIU98_RS05050 (FIU98_04995) - 1103739..1104329 (+) 591 WP_256663069.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 524 a.a.        Molecular weight: 58339.37 Da        Isoelectric Point: 8.4784

>NTDB_id=393637 FIU98_RS05025 WP_152487972.1 1098518..1100092(-) (pilS) [Pseudomonas sp. THAF42]
MQDGAQGRRILRLYHFYRLIIGLALVLLISSNLDEQLLDVVHIGLFRAGSWVYLILNIFIAVLVQKPKHLAQLFSLALVD
VIFLSGLFYAAGGTPSGIGNLLVVAVAIANILLRGRIGLLIAAVAAMALIYLTFYLSLSRPAAVAQYVQAGALGALCFAG
ALFIQGITRRLQLSETLAEQRAADVANLEELNEQIIQRMRTGILVLDTQHRVLLANQGATQLLGRGELSGKIIDPHCPEL
LKRLQQWLHNPSMRPDSLQAQVDGPVLQPSFISLQRGEQQHTLVFLDDISQIAQQAQQLKLASLGRLTAGIAHEIRNPLG
AISHAAQLLQESEDLQGPDQRLAQIIQDHSKRMNLVIENVLQLSRRRQAEPQLLDLKYWLHRFASEFRSSAPSDRQIHLE
TRGGSLQTRMDPHQLTQVLTNLVQNGLRYSAQQHRLGQVWLQLFRDEKSDLPVLEVLDDGPGVSAEQEQHIFEPFFTTEN
KGTGLGLYISRELCQSNQARLDYKPREGGGSCFRITFAHPRKLS

Nucleotide


Download         Length: 1575 bp        

>NTDB_id=393637 FIU98_RS05025 WP_152487972.1 1098518..1100092(-) (pilS) [Pseudomonas sp. THAF42]
ATGCAGGATGGAGCCCAGGGGCGACGCATCCTCAGGCTCTATCATTTCTATCGTCTGATCATCGGCCTGGCACTGGTTCT
GCTGATCTCCAGCAACCTCGACGAACAACTGCTGGATGTCGTGCACATCGGCCTGTTTCGCGCCGGCAGCTGGGTCTATC
TGATCCTGAACATCTTCATCGCGGTGCTGGTGCAGAAACCCAAGCACCTGGCGCAACTGTTCAGCCTGGCCCTGGTCGAC
GTGATCTTCCTCTCCGGCCTCTTCTACGCGGCCGGGGGCACGCCGAGCGGCATCGGCAACCTGCTGGTGGTCGCGGTGGC
GATCGCCAACATCCTGCTGCGCGGGCGCATCGGCCTGCTGATCGCCGCCGTCGCCGCCATGGCGCTGATCTACCTGACCT
TCTACCTGAGCCTCAGTCGCCCCGCTGCCGTCGCCCAGTATGTCCAGGCTGGCGCGCTGGGTGCGCTGTGCTTCGCCGGA
GCACTCTTCATCCAGGGCATCACCCGCCGCCTGCAGTTGAGCGAGACCCTCGCCGAGCAGCGTGCAGCCGACGTGGCCAA
CCTGGAAGAGCTCAACGAGCAGATCATCCAGCGCATGCGCACCGGCATCCTGGTCCTGGACACCCAGCACCGGGTGCTGC
TGGCCAACCAGGGCGCGACGCAGTTGCTCGGACGTGGCGAACTCAGCGGCAAGATCATCGACCCGCACTGCCCCGAACTG
CTCAAGCGCCTGCAGCAATGGCTGCACAACCCGAGCATGCGCCCGGACAGCCTGCAGGCACAGGTCGACGGTCCGGTGCT
GCAGCCCAGCTTCATCTCCCTGCAGCGCGGCGAGCAGCAGCACACCCTGGTGTTTCTCGACGATATCTCGCAGATCGCCC
AGCAGGCGCAGCAGCTCAAGCTGGCTTCGCTCGGCCGCCTGACGGCGGGCATCGCCCACGAGATACGCAACCCGCTCGGC
GCCATCAGCCACGCCGCGCAGTTGCTGCAGGAGTCGGAAGACCTGCAAGGCCCGGATCAGCGCCTGGCACAGATCATCCA
GGATCACTCCAAGCGCATGAACCTGGTGATCGAGAACGTGCTGCAACTGTCGCGCCGACGCCAGGCCGAACCGCAGCTGC
TCGACCTGAAGTACTGGCTGCACCGCTTCGCCAGCGAGTTCCGCAGCTCGGCGCCAAGCGACCGACAGATTCACCTGGAG
ACCCGGGGCGGCAGCCTGCAGACGCGCATGGACCCTCACCAGCTGACCCAGGTACTGACCAATCTGGTGCAGAACGGCCT
GCGCTATAGTGCTCAGCAACACCGCCTCGGCCAGGTCTGGCTACAGCTGTTCCGCGACGAGAAGAGCGACCTGCCGGTGC
TCGAAGTGCTCGACGACGGCCCTGGCGTATCTGCGGAGCAGGAACAGCACATCTTCGAGCCGTTCTTCACCACCGAGAAC
AAGGGAACCGGGCTCGGCCTGTATATTTCCCGTGAACTGTGCCAGAGCAATCAGGCCCGCCTCGACTACAAACCTCGCGA
GGGTGGCGGCAGCTGCTTCCGCATAACCTTCGCCCACCCGCGCAAACTGAGCTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(411-517)

His Kinase A (phospho-acceptor) domain (HisKA)

(303-367)

PAS domain (PAS_8)

(193-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

67.823

99.046

0.672

Multiple sequence alignment