Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   FIU98_RS05020 Genome accession   NZ_CP045359
Coordinates   1097175..1098515 (-) Length   446 a.a.
NCBI ID   WP_134678120.1    Uniprot ID   -
Organism   Pseudomonas sp. THAF42     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1092175..1103515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIU98_RS04990 (FIU98_04945) - 1092841..1093404 (-) 564 WP_152487966.1 PilX N-terminal domain-containing pilus assembly protein -
  FIU98_RS04995 (FIU98_04950) - 1093401..1094132 (-) 732 WP_172979128.1 PilW family protein -
  FIU98_RS05000 (FIU98_04955) pilV 1094179..1094760 (-) 582 WP_172979129.1 type IV pilus modification protein PilV -
  FIU98_RS05005 - 1094769..1095338 (-) 570 WP_152487969.1 GspH/FimT family protein -
  FIU98_RS25180 - 1095420..1095932 (-) 513 WP_152487970.1 GspH/FimT family pseudopilin -
  FIU98_RS05015 (FIU98_04960) thiO 1096038..1097138 (+) 1101 WP_152487971.1 glycine oxidase ThiO -
  FIU98_RS05020 (FIU98_04965) pilR 1097175..1098515 (-) 1341 WP_134678120.1 sigma-54 dependent transcriptional regulator Regulator
  FIU98_RS05025 (FIU98_04970) pilS 1098518..1100092 (-) 1575 WP_152487972.1 PAS domain-containing sensor histidine kinase Regulator
  FIU98_RS05030 (FIU98_04975) - 1100100..1100336 (-) 237 WP_152487973.1 PP0621 family protein -
  FIU98_RS05035 (FIU98_04980) - 1100475..1101467 (-) 993 WP_134678118.1 outer membrane protein assembly factor BamD -
  FIU98_RS05040 (FIU98_04985) rluD 1101740..1102714 (+) 975 WP_047590232.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  FIU98_RS05045 (FIU98_04990) pgeF 1102711..1103442 (+) 732 WP_152487974.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49866.29 Da        Isoelectric Point: 5.6210

>NTDB_id=393636 FIU98_RS05020 WP_134678120.1 1097175..1098515(-) (pilR) [Pseudomonas sp. THAF42]
MTRQRALIVDDEPDIRELLEITLGRMKLDTRSARNVKEAREWLAREPFDLCLTDMRLPDGTGLDLVQHIQQRHPQVPVAM
ITAYGSLDTAINALKAGAFDFVTKPVDLARLRELVAAALRIRSPEGDEAPVDSRLLGDSPPMKSLRKQIQKLSRSQAPVY
ISGESGSGKELVARLIHEQGPRMEHPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAANGGTLFLDEVADLP
LPMQVKLLRAIQEKAVRAVGGQQEVVVDVRILCATHKDLAAEVAAGRFRQDLYYRLNVIELRVPSLRERREDIAQLAEVM
LARLAEGSGLAAAKLQPDALEKLKNYRFPGNVRELENMLERAYTLCEDDQIRPSDLRLADASAPTGEVGEACLAQIDNLE
DYLEEIERKLIMQALEETRWNRTAAAERLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=393636 FIU98_RS05020 WP_134678120.1 1097175..1098515(-) (pilR) [Pseudomonas sp. THAF42]
ATGACCCGCCAGAGAGCCCTGATCGTCGACGACGAACCCGATATCCGCGAACTGCTGGAAATCACCCTCGGACGGATGAA
GCTGGACACCCGTAGCGCGCGCAACGTCAAGGAGGCGCGCGAGTGGCTGGCACGCGAGCCCTTCGACCTGTGCCTCACCG
ACATGCGCCTGCCGGACGGCACCGGCCTCGATCTGGTGCAGCACATCCAGCAGCGCCACCCGCAGGTACCGGTGGCGATG
ATCACCGCCTACGGCAGCCTGGACACGGCGATCAACGCCCTCAAGGCCGGCGCCTTCGACTTCGTCACCAAGCCGGTCGA
CCTCGCCCGCCTGCGCGAGCTGGTCGCCGCCGCGCTGCGCATCCGTTCCCCGGAAGGTGACGAGGCGCCGGTCGACAGCC
GCCTGCTGGGCGACTCGCCACCGATGAAGTCGCTACGCAAACAGATTCAGAAACTCTCGCGCAGCCAGGCGCCGGTCTAT
ATCAGCGGCGAATCCGGCAGCGGCAAGGAGCTTGTCGCGCGCCTGATCCATGAACAGGGGCCGCGCATGGAGCACCCCTT
CGTGCCGGTCAACTGTGGCGCGATCCCTTCGGAGCTGATGGAAAGCGAATTCTTCGGCCACAAGAAAGGCAGCTTCACCG
GCGCCATCGAAGACAAGCAGGGCCTGTTCCAGGCCGCCAATGGCGGCACGCTGTTCCTCGACGAAGTGGCGGACCTGCCG
CTGCCGATGCAGGTCAAGCTGCTGCGCGCGATTCAGGAAAAGGCCGTGCGCGCGGTCGGCGGCCAGCAGGAAGTGGTGGT
CGACGTACGCATCCTCTGCGCCACCCACAAGGATCTGGCCGCCGAAGTCGCCGCCGGGCGCTTCCGCCAGGATCTCTACT
ACCGTCTCAACGTCATCGAGCTGCGCGTGCCGTCCCTGCGCGAGCGCCGCGAGGATATCGCACAGCTGGCCGAGGTCATG
CTCGCGCGCCTGGCGGAGGGTTCCGGCCTGGCCGCAGCCAAGCTGCAACCCGATGCGCTGGAGAAGCTCAAGAACTATCG
TTTTCCCGGTAACGTGCGCGAACTGGAGAACATGCTCGAGCGCGCCTACACACTGTGCGAAGACGACCAGATCAGGCCGT
CCGACCTGCGCCTGGCCGACGCCAGCGCCCCCACTGGCGAAGTCGGCGAAGCTTGCCTGGCGCAGATCGACAACCTCGAG
GACTACCTCGAGGAAATCGAGCGCAAGCTGATCATGCAGGCCCTGGAGGAAACCCGCTGGAACCGCACGGCAGCGGCGGA
GCGCCTGGGCCTGACCTTCCGTTCGATGCGCTACCGCCTGAAGAAACTGGGTATCGACTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(136-301)

Bacterial regulatory protein, Fis family (HTH_8)

(403-443)

Response regulator receiver domain (Response_reg)

(7-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

87.444

100

0.874
  pilR Acinetobacter baumannii strain A118

49.783

100

0.513

Multiple sequence alignment