Detailed information NTG0393636

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HP434_RS04980
• Genome accession: NZ_CP053720
• Coordinates: 1026213..1027205 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain CP131_Sichuan
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1021213..1032205

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HP434_RS04950 (HP434_04945)	ispD	1021274..1021984 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
HP434_RS04955 (HP434_04950)	ispF	1021984..1022463 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HP434_RS04960 (HP434_04955)	truD	1022460..1023509 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
HP434_RS04965 (HP434_04960)	surE	1023490..1024251 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
HP434_RS04970 (HP434_04965)	pcm	1024245..1024871 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
HP434_RS04975 (HP434_04970)	nlpD	1025056..1026150 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
HP434_RS04980 (HP434_04975)	rpoS	1026213..1027205 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
HP434_RS04985 (HP434_04980)	ygbN	1027299..1028663 (-)	1365	WP_000104441.1	GntP family transporter	-
HP434_RS04990 (HP434_04985)	ygbM	1028752..1029528 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
HP434_RS04995 (HP434_04990)	ygbL	1029533..1030171 (-)	639	WP_001278994.1	aldolase	-
HP434_RS05000 (HP434_04995)	otnK	1030168..1031430 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=393636 HP434_RS04980 WP_000081550.1 1026213..1027205(+) (rpoS) [Escherichia coli strain CP131_Sichuan]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=393636 HP434_RS04980 WP_000081550.1 1026213..1027205(+) (rpoS) [Escherichia coli strain CP131_Sichuan]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715