Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   FIV01_RS12475 Genome accession   NZ_CP045350
Coordinates   2704676..2705194 (-) Length   172 a.a.
NCBI ID   WP_152431282.1    Uniprot ID   A0A5P9CM03
Organism   Vibrio aquimaris strain THAF100     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2699676..2710194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIV01_RS12470 (FIV01_12600) - 2704200..2704640 (+) 441 WP_152431733.1 RDD family protein -
  FIV01_RS12475 (FIV01_12605) luxS 2704676..2705194 (-) 519 WP_152431282.1 S-ribosylhomocysteine lyase Regulator
  FIV01_RS12480 (FIV01_12610) gshA 2705567..2707135 (-) 1569 WP_152431734.1 glutamate--cysteine ligase -
  FIV01_RS12485 (FIV01_12615) - 2707237..2710086 (-) 2850 WP_152431283.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18934.75 Da        Isoelectric Point: 5.5543

>NTDB_id=393578 FIV01_RS12475 WP_152431282.1 2704676..2705194(-) (luxS) [Vibrio aquimaris strain THAF100]
MPLLDSFTVDHTKMNAPAVRVAKTMSTPNGDTITVFDLRFTAPNKAILSEKGIHTLEHLYAGFMRNHLNGNEVEIIDISP
MGCRTGFYMSLVGTPSEGRVAKAWLAAMYDVLKVEKQNHIPELNEYQCGTAAMHSLSEAKQIAQDIINSGVEVNKNDELA
LPESMLKELAVC

Nucleotide


Download         Length: 519 bp        

>NTDB_id=393578 FIV01_RS12475 WP_152431282.1 2704676..2705194(-) (luxS) [Vibrio aquimaris strain THAF100]
ATGCCATTGCTTGATAGCTTTACTGTTGATCACACTAAAATGAATGCTCCAGCAGTTAGAGTCGCAAAGACCATGAGTAC
ACCAAACGGCGATACGATCACCGTATTTGATTTACGCTTTACTGCCCCTAACAAAGCTATTCTCTCTGAGAAAGGTATTC
ACACATTAGAACACTTATACGCAGGCTTTATGCGTAATCATCTCAATGGAAATGAGGTAGAAATTATAGACATTTCTCCC
ATGGGGTGCAGAACAGGTTTTTATATGAGTTTAGTCGGAACACCTTCAGAAGGCCGAGTTGCAAAAGCTTGGCTTGCAGC
CATGTATGATGTGCTCAAAGTTGAAAAACAAAATCATATTCCTGAATTAAATGAATATCAGTGTGGGACGGCTGCTATGC
ACTCTTTGTCTGAGGCAAAGCAAATAGCACAAGACATAATTAACAGTGGTGTAGAAGTTAATAAAAATGACGAATTGGCT
CTCCCAGAGTCAATGTTGAAAGAGTTAGCGGTTTGCTAG

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P9CM03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

82.456

99.419

0.82

Multiple sequence alignment