Detailed information
Bioinformatically predicted
Overview
| Name | opaR | Type | Regulator |
| Locus tag | FIV01_RS12180 | Genome accession | NZ_CP045350 |
| Coordinates | 2648639..2649244 (+) | Length | 201 a.a. |
| NCBI ID | WP_114784933.1 | Uniprot ID | A0A5P9CLV3 |
| Organism | Vibrio aquimaris strain THAF100 | ||
| Function | regulation of Dns (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2643639..2654244
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FIV01_RS12155 (FIV01_12285) | panC | 2644084..2644986 (+) | 903 | WP_152431236.1 | pantoate--beta-alanine ligase | - |
| FIV01_RS12160 (FIV01_12290) | - | 2645058..2645828 (-) | 771 | WP_152431237.1 | ABC transporter permease | - |
| FIV01_RS12165 (FIV01_12295) | - | 2645830..2646744 (-) | 915 | WP_152431238.1 | ABC transporter ATP-binding protein | - |
| FIV01_RS12170 (FIV01_12300) | can | 2647075..2647734 (+) | 660 | WP_152431239.1 | carbonate dehydratase | - |
| FIV01_RS12175 (FIV01_12305) | hpt | 2647805..2648335 (-) | 531 | WP_114785251.1 | hypoxanthine phosphoribosyltransferase | - |
| FIV01_RS12180 (FIV01_12310) | opaR | 2648639..2649244 (+) | 606 | WP_114784933.1 | LuxR/HapR/OpaR family quorum-sensing transcriptional regulator | Regulator |
| FIV01_RS12185 (FIV01_12315) | lpdA | 2649365..2650795 (-) | 1431 | WP_152431240.1 | dihydrolipoyl dehydrogenase | - |
| FIV01_RS12190 (FIV01_12320) | aceF | 2651049..2652920 (-) | 1872 | WP_152431241.1 | pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase | - |
Sequence
Protein
Download Length: 201 a.a. Molecular weight: 23203.35 Da Isoelectric Point: 5.6234
>NTDB_id=393574 FIV01_RS12180 WP_114784933.1 2648639..2649244(+) (opaR) [Vibrio aquimaris strain THAF100]
MDSIAKRPRTRLSPQKRKQQLMEISLEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLNYVVRQFSNFLS
DNIDLDIHAKENLRNLTSAMVDLVVNDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFVKAIERGEVCDTHDPA
DLATLFHGICYSLFVQANRTQDDDSVNRLTQSYLDMLCIYK
MDSIAKRPRTRLSPQKRKQQLMEISLEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLNYVVRQFSNFLS
DNIDLDIHAKENLRNLTSAMVDLVVNDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFVKAIERGEVCDTHDPA
DLATLFHGICYSLFVQANRTQDDDSVNRLTQSYLDMLCIYK
Nucleotide
Download Length: 606 bp
>NTDB_id=393574 FIV01_RS12180 WP_114784933.1 2648639..2649244(+) (opaR) [Vibrio aquimaris strain THAF100]
ATGGATTCTATAGCTAAAAGACCGCGTACGCGCCTTTCTCCACAAAAACGCAAGCAACAACTAATGGAAATTTCACTAGA
GGTGTTCGCTCGTCGTGGTATCGGCCGTGGTGGTCACGCAGACATCGCAGAAATTGCTCAAGTTTCTGTCGCAACCGTAT
TTAACTACTTCCCGACCCGTGAAGACTTGGTCGATGATGTGTTAAATTATGTTGTACGTCAGTTCTCTAACTTCCTATCA
GACAACATCGATTTGGACATTCATGCGAAAGAAAACCTTCGTAACCTAACTTCTGCTATGGTCGATCTCGTGGTTAATGA
CTGCCACTGGCTAAAAGTATGGTTCGAGTGGAGCGCTTCAACGCGTGATGAAGTTTGGCCACTGTTCGTGTCAACAAACC
GTACTAACCAGCTGTTAGTTCAAAATATGTTTGTTAAAGCAATCGAAAGAGGCGAAGTCTGCGATACTCATGATCCTGCG
GATCTAGCAACGCTATTCCATGGCATTTGTTACTCACTGTTTGTACAGGCAAATCGTACACAGGATGATGACTCAGTAAA
CCGCTTAACACAAAGCTACCTAGATATGCTTTGTATCTATAAATAA
ATGGATTCTATAGCTAAAAGACCGCGTACGCGCCTTTCTCCACAAAAACGCAAGCAACAACTAATGGAAATTTCACTAGA
GGTGTTCGCTCGTCGTGGTATCGGCCGTGGTGGTCACGCAGACATCGCAGAAATTGCTCAAGTTTCTGTCGCAACCGTAT
TTAACTACTTCCCGACCCGTGAAGACTTGGTCGATGATGTGTTAAATTATGTTGTACGTCAGTTCTCTAACTTCCTATCA
GACAACATCGATTTGGACATTCATGCGAAAGAAAACCTTCGTAACCTAACTTCTGCTATGGTCGATCTCGTGGTTAATGA
CTGCCACTGGCTAAAAGTATGGTTCGAGTGGAGCGCTTCAACGCGTGATGAAGTTTGGCCACTGTTCGTGTCAACAAACC
GTACTAACCAGCTGTTAGTTCAAAATATGTTTGTTAAAGCAATCGAAAGAGGCGAAGTCTGCGATACTCATGATCCTGCG
GATCTAGCAACGCTATTCCATGGCATTTGTTACTCACTGTTTGTACAGGCAAATCGTACACAGGATGATGACTCAGTAAA
CCGCTTAACACAAAGCTACCTAGATATGCTTTGTATCTATAAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| opaR | Vibrio parahaemolyticus RIMD 2210633 |
84.5 |
99.502 |
0.841 |
| hapR | Vibrio cholerae C6706 |
75.879 |
99.005 |
0.751 |
| hapR | Vibrio cholerae strain A1552 |
75.879 |
99.005 |
0.751 |