Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   FIV01_RS06670 Genome accession   NZ_CP045350
Coordinates   1425481..1426905 (-) Length   474 a.a.
NCBI ID   WP_152431677.1    Uniprot ID   A0A5P9CIF8
Organism   Vibrio aquimaris strain THAF100     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1420481..1431905
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIV01_RS06650 (FIV01_06675) - 1421910..1423112 (+) 1203 WP_152430294.1 HD-GYP domain-containing protein -
  FIV01_RS06655 (FIV01_06680) cdd 1423158..1424045 (-) 888 WP_152430295.1 cytidine deaminase -
  FIV01_RS06660 (FIV01_06685) - 1424293..1424970 (-) 678 WP_152430296.1 CidB/LrgB family autolysis modulator -
  FIV01_RS06665 (FIV01_06690) - 1424970..1425335 (-) 366 WP_152430297.1 CidA/LrgA family protein -
  FIV01_RS06670 (FIV01_06695) sbcB 1425481..1426905 (-) 1425 WP_152431677.1 exodeoxyribonuclease I Machinery gene
  FIV01_RS06675 (FIV01_06700) - 1427015..1427680 (-) 666 WP_216649459.1 transporter substrate-binding domain-containing protein -
  FIV01_RS06680 (FIV01_06705) - 1427930..1429303 (-) 1374 WP_152430299.1 L-cystine transporter -
  FIV01_RS06685 (FIV01_06710) - 1429466..1430152 (-) 687 WP_152430300.1 NAD(P)H-binding protein -
  FIV01_RS06690 (FIV01_06715) - 1430825..1431853 (+) 1029 WP_152430301.1 succinylglutamate desuccinylase -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54792.13 Da        Isoelectric Point: 5.1502

>NTDB_id=393568 FIV01_RS06670 WP_152431677.1 1425481..1426905(-) (sbcB) [Vibrio aquimaris strain THAF100]
MSNKEQPTFFFFDYETWGTSPALDRPCQFAGVRTDMDFNIVGEPLVIYCQPPSDYLPSPEAALITGITPQTTVQHGLPEP
EFIAQIHRQLSVPNTTSLGYNNIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGINWPENEEGFT
SFKLEHLSVANGIEHENAHDAMADVIATIEMAKKLKTAQPKLFDYFLNMRHKRKLNELVDIVNMTPLMHVSGMFGRECQY
TSWVVPLAWHPTNQNALIVVDLAKDPQPLFEFDTEQLNQRLYTKHSDLGPDELPVPIKLIHLNKCPILAPAKTLTAENAE
IIGINREQCLKNLELIKQNPEIREKLVALYSEERKYEASHNVDSQLYDGFFSPADRSSMNIIKEADAEKLASLDISFYDK
RIAPLLFRYRARNFPSTLSDSEQRRWASHCQDYFANHIEDYMLNLENLVHKYEDDESKLVILKSIYKYVEKLVS

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=393568 FIV01_RS06670 WP_152431677.1 1425481..1426905(-) (sbcB) [Vibrio aquimaris strain THAF100]
ATGAGTAACAAAGAACAACCAACATTTTTCTTCTTCGACTATGAGACATGGGGGACAAGTCCAGCTCTCGATAGGCCATG
CCAGTTTGCTGGTGTGCGCACTGATATGGACTTCAATATTGTTGGTGAGCCTCTGGTTATTTACTGTCAGCCTCCTTCAG
ATTATTTGCCTTCACCGGAAGCAGCCCTGATCACAGGTATTACGCCACAAACTACCGTTCAACATGGTTTACCTGAACCA
GAGTTTATTGCTCAAATTCACCGTCAACTATCTGTTCCCAATACGACTAGCTTGGGTTATAACAATATCCGATTTGATGA
TGAAGTTACTCGCTATACCTGTTACCGTAACTTCATCGACCCTTACGCTTGGAGCTGGCAAAACGGCAATTCACGTTGGG
ATTTACTGGATGTTATGCGAGCCTGCCATGCACTTCGGCCAGAAGGTATCAACTGGCCAGAAAATGAAGAGGGTTTTACT
AGCTTTAAACTCGAACATCTTTCTGTTGCCAATGGTATAGAACACGAAAACGCCCACGATGCGATGGCTGATGTGATTGC
AACCATTGAAATGGCCAAAAAGCTCAAAACCGCCCAGCCCAAGCTGTTTGATTACTTTTTAAACATGCGCCATAAGCGCA
AGCTCAATGAGCTAGTTGACATTGTTAATATGACACCACTGATGCATGTCTCTGGTATGTTTGGGCGTGAGTGTCAATAT
ACAAGTTGGGTAGTACCATTAGCATGGCATCCAACCAATCAAAATGCCCTGATTGTAGTCGACTTAGCTAAAGATCCTCA
GCCACTTTTTGAGTTTGATACCGAGCAGTTAAATCAGCGACTATACACTAAACACTCAGACCTCGGCCCAGATGAGCTTC
CTGTGCCCATTAAGCTGATACACCTAAATAAATGCCCTATCCTAGCACCAGCAAAAACACTGACGGCTGAGAACGCAGAA
ATCATAGGTATCAACCGTGAACAATGCCTGAAAAATCTTGAACTTATCAAACAAAACCCTGAGATTAGAGAGAAACTTGT
TGCGCTTTATTCAGAAGAACGAAAGTACGAAGCAAGTCACAACGTAGATTCACAGCTATATGATGGTTTTTTCTCTCCTG
CAGACCGCAGCTCAATGAACATTATTAAAGAAGCAGACGCAGAGAAATTGGCTTCGTTAGACATCTCTTTTTACGATAAA
CGTATTGCCCCACTCTTGTTTCGCTATCGAGCAAGAAACTTCCCTTCAACTCTGAGTGACAGTGAACAACGTCGATGGGC
AAGCCACTGCCAAGATTATTTTGCCAACCATATTGAAGACTACATGCTCAATTTGGAAAACTTAGTTCACAAATATGAAG
ATGACGAAAGCAAACTTGTTATTTTAAAATCTATCTATAAGTACGTTGAGAAGTTAGTTTCGTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P9CIF8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

75.264

99.789

0.751

Multiple sequence alignment