Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   FIV01_RS04800 Genome accession   NZ_CP045350
Coordinates   1009856..1011253 (+) Length   465 a.a.
NCBI ID   WP_152429975.1    Uniprot ID   A0A5P9CI77
Organism   Vibrio aquimaris strain THAF100     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1004856..1016253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIV01_RS04785 (FIV01_04785) - 1004962..1006644 (+) 1683 WP_152429973.1 ATP-binding protein -
  FIV01_RS04795 (FIV01_04795) uvrB 1007495..1009525 (+) 2031 WP_152429974.1 excinuclease ABC subunit UvrB -
  FIV01_RS04800 (FIV01_04810) luxO 1009856..1011253 (+) 1398 WP_152429975.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  FIV01_RS04805 (FIV01_04815) luxU 1011258..1011596 (+) 339 WP_152429976.1 quorum-sensing phosphorelay protein LuxU -
  FIV01_RS04810 (FIV01_04820) yvcK 1011582..1012469 (-) 888 WP_152429977.1 uridine diphosphate-N-acetylglucosamine-binding protein YvcK -
  FIV01_RS04815 (FIV01_04825) moaA 1012769..1013755 (+) 987 WP_152429978.1 GTP 3',8-cyclase MoaA -
  FIV01_RS04820 (FIV01_04830) moaB 1013842..1014354 (+) 513 WP_152429979.1 molybdenum cofactor biosynthesis protein B -
  FIV01_RS04825 (FIV01_04835) moaC 1014362..1014841 (+) 480 WP_152429980.1 cyclic pyranopterin monophosphate synthase MoaC -
  FIV01_RS04830 (FIV01_04840) moaD 1014838..1015083 (+) 246 WP_152429981.1 molybdopterin synthase sulfur carrier subunit -
  FIV01_RS04835 (FIV01_04845) moaE 1015089..1015565 (+) 477 WP_152429982.1 molybdopterin synthase catalytic subunit MoaE -
  FIV01_RS04840 nrtS 1015584..1015787 (+) 204 WP_152429983.1 nitrate/nitrite transporter NrtS -

Sequence

Protein


Download         Length: 465 a.a.        Molecular weight: 51676.88 Da        Isoelectric Point: 5.8804

>NTDB_id=393564 FIV01_RS04800 WP_152429975.1 1009856..1011253(+) (luxO) [Vibrio aquimaris strain THAF100]
MHQNTDTQKSKYLLMVEDTASVAALYRSYLAPLGIDINIVGTGRDAIESISFRTPDLILLDLRLPDMTGMNVLHAVKQKN
ADIPVIFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLRNASDNPGNQNYQGFIGSSQTMQAVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRD
RGDDVIEIAYSLLGFMSKEEGKDFVRLTPEVVNRFAQYEWPGNVRQLQNVLRNVVVLNNGEHISIDMLPPPLNVPTDNHI
RVDWQEKGELTVNDIFPLWMTEKKAIEQAIDACDGNIPKAAGYLDVSPSTIYRKLQNWNAAKETQ

Nucleotide


Download         Length: 1398 bp        

>NTDB_id=393564 FIV01_RS04800 WP_152429975.1 1009856..1011253(+) (luxO) [Vibrio aquimaris strain THAF100]
ATGCACCAAAATACTGACACACAAAAGTCTAAATATTTGTTGATGGTGGAGGATACTGCTTCAGTCGCGGCACTGTATCG
CTCTTACCTCGCGCCTCTTGGCATCGATATTAATATTGTTGGTACGGGTCGAGACGCGATTGAGAGTATTAGTTTCCGTA
CACCTGATCTCATCCTACTCGACTTGAGGCTCCCTGATATGACAGGGATGAATGTCCTACATGCGGTTAAACAGAAAAAT
GCCGATATTCCGGTTATTTTTATGACTGCTCATGGCTCAATCGATACTGCCGTGGAGGCCATGCGTCACGGCGCTCAGGA
CTTTTTGATCAAGCCTTGTGAAGCGGACAGGCTGCGTGTCACCGTCAACAATGCTATTCGTAAAGCGAGCAAACTAAGGA
ATGCCTCTGATAACCCCGGAAATCAAAACTATCAAGGCTTTATTGGGAGTAGTCAGACCATGCAGGCGGTGTATCGAACG
ATAGATTCCGCGGCCTCAAGTAAAGCCAGTATTTTTATTACTGGTGAGAGTGGAACGGGTAAAGAAGTATGTGCCGAAGC
CATTCATGCGGCAAGCAAACGTGGGGATAAGCCCTTTATTGCAATTAACTGTGCTGCAATCCCGAAAGATTTAATCGAAA
GTGAGTTATTTGGTCATGTCAAAGGTGCCTTCACTGGGGCTGCTACTGACAGGCAGGGCGCTGCGGAACTTGCTGATGGT
GGAACACTGTTTCTCGATGAGCTATGTGAGATGGATCTTGATTTACAAACTAAACTCCTACGCTTTATTCAAACTGGAAC
CTTTCAAAAAGTAGGCTCTTCAAAAATGAAGAGTGTCGATGTGCGCTTTGTTTGTGCAACCAACCGTGATCCATGGAAAG
AAGTTCAAGAAGGGCGCTTTAGAGAGGATTTGTATTATCGACTGTACGTCATCCCGCTGCATCTACCTCCATTGAGGGAT
CGTGGTGATGACGTGATAGAAATTGCATATTCTTTGCTCGGTTTTATGTCTAAGGAGGAAGGTAAAGACTTTGTTAGGCT
GACGCCTGAAGTTGTCAATCGTTTCGCACAATACGAATGGCCGGGTAATGTTCGTCAGTTGCAAAACGTATTACGAAATG
TGGTCGTGCTCAATAACGGTGAACATATTTCGATAGATATGTTACCACCTCCACTCAATGTACCGACCGACAACCACATT
AGGGTTGACTGGCAAGAAAAAGGTGAGCTCACAGTCAACGATATATTCCCTCTTTGGATGACAGAGAAAAAGGCGATAGA
ACAAGCGATTGACGCATGTGACGGAAATATTCCGAAAGCAGCTGGTTATCTGGACGTCAGTCCATCAACGATTTATCGTA
AACTTCAGAACTGGAACGCAGCAAAGGAAACGCAATAG

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(418-457)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Response regulator receiver domain (Response_reg)

(14-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P9CI77

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

87.5

96.344

0.843

Multiple sequence alignment