Detailed information NTG0393499

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FIV04_RS12435
• Genome accession: NZ_CP045338
• Coordinates: 2790520..2791482 (-)
• Length: 320 a.a.
• NCBI ID: WP_152469289.1
• Uniprot ID: A0A5P9BAE0
• Organism: Vibrio sp. THAF190c
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2785520..2796482

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FIV04_RS12420 (FIV04_12465)	recA	2786071..2787108 (-)	1038	WP_032549782.1	recombinase RecA	Machinery gene
FIV04_RS12425 (FIV04_12470)	pncC	2787249..2787740 (-)	492	WP_152469287.1	nicotinamide-nucleotide amidase	-
FIV04_RS12430 (FIV04_12475)	mutS	2787873..2790434 (+)	2562	WP_152469288.1	DNA mismatch repair protein MutS	-
FIV04_RS12435 (FIV04_12480)	rpoS	2790520..2791482 (-)	963	WP_152469289.1	RNA polymerase sigma factor RpoS	Regulator
FIV04_RS12440 (FIV04_12485)	-	2791578..2792528 (-)	951	WP_152469290.1	peptidoglycan DD-metalloendopeptidase family protein	-
FIV04_RS12445 (FIV04_12490)	-	2792561..2793187 (-)	627	WP_150869276.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
FIV04_RS12450 (FIV04_12495)	surE	2793184..2793930 (-)	747	WP_152469291.1	5'/3'-nucleotidase SurE	-
FIV04_RS12455 (FIV04_12500)	truD	2793967..2795016 (-)	1050	WP_152469292.1	tRNA pseudouridine(13) synthase TruD	-
FIV04_RS12460 (FIV04_12505)	ispF	2795039..2795518 (-)	480	WP_152469570.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FIV04_RS12465 (FIV04_12510)	ispD	2795521..2796222 (-)	702	WP_152469293.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 320 a.a.
• Molecular weight: 36653.65 Da
• Isoelectric Point: 4.7751

>NTDB_id=393499 FIV04_RS12435 WP_152469289.1 2790520..2791482(-) (rpoS) [Vibrio sp. THAF190c]
MSISNAVIKEEFELDQETTELANVEQGEQTVTKKTEAKEEVEVTSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRGD
EAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRL
PIHVVKELNIYLRTARELSQKLDHEPTAEEIATKLDKPVSDVSKMLRLNERVSSVDTPIGGDGEKALLDIIPDVNNSDPE
VSTQDSDIKTSLIYWLDELNPKQKEVLARRFGLLGYEPSTLEEVGRERVRQIQVEGLRRLREILIKQGLNMENLFNVEND

Nucleotide

• Length: 963 bp

>NTDB_id=393499 FIV04_RS12435 WP_152469289.1 2790520..2791482(-) (rpoS) [Vibrio sp. THAF190c]
ATGAGTATCAGCAATGCAGTTATTAAAGAAGAGTTCGAACTTGACCAAGAGACCACGGAGTTGGCAAATGTTGAGCAAGG
CGAACAAACCGTCACTAAAAAAACAGAAGCAAAAGAAGAAGTCGAAGTGACTTCGAAAAGCCTAGATGCGACTCAGTTGT
ATTTGGGTGAAATTGGCTTCTCACCACTCTTAACCGCAGAAGAAGAAGTGCTTTATGCTCGTCGCGCCTTACGCGGAGAC
GAAGCTGCTCGCAAGCGCATGATCGAAAGTAACCTACGTCTTGTGGTTAAAATTTCACGTCGTTACAGCAACCGTGGCTT
AGCTCTTCTCGATCTTATCGAAGAGGGTAACCTAGGTTTGATCCGTGCTGTTGAGAAGTTCGATCCAGAACGAGGCTTCC
GCTTTTCTACTTACGCAACATGGTGGATTCGTCAAACGATCGAACGTGCGTTGATGAACCAAACGCGTACTATTCGTCTG
CCAATTCATGTTGTGAAAGAGCTAAACATCTACCTGCGTACCGCTCGTGAGCTATCACAAAAGCTTGACCATGAGCCAAC
AGCGGAAGAGATCGCAACCAAGCTAGATAAGCCGGTGAGCGACGTAAGCAAAATGCTACGCCTTAATGAACGTGTAAGCT
CAGTCGATACACCAATCGGTGGTGACGGCGAGAAAGCGCTGCTGGACATCATTCCAGACGTAAACAACTCAGACCCAGAA
GTGTCGACTCAAGACAGCGATATCAAAACATCACTGATCTACTGGTTAGATGAACTGAATCCTAAGCAGAAAGAAGTGCT
TGCACGTCGTTTTGGGCTTCTTGGTTACGAGCCATCGACTCTTGAAGAAGTCGGTCGTGAGCGTGTGCGCCAGATTCAAG
TAGAAGGTCTACGTCGTTTAAGAGAAATCCTGATCAAGCAAGGCTTGAATATGGAAAATCTATTCAACGTCGAAAACGAT
TAG

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (167-240)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (49-82)

• Sigma-70, region 4 (Sigma70_r4) (255-302)

• Sigma-70 region 2 (Sigma70_r2) (87-156)

3D structure

• AlphaFold DB: A0A5P9BAE0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	79.94	100	0.834