Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   FIV04_RS08175 Genome accession   NZ_CP045338
Coordinates   1842838..1844262 (+) Length   474 a.a.
NCBI ID   WP_152468827.1    Uniprot ID   A0A5P9B835
Organism   Vibrio sp. THAF190c     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1837838..1849262
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIV04_RS08155 (FIV04_08205) - 1838163..1839221 (-) 1059 WP_152468824.1 AraC family transcriptional regulator -
  FIV04_RS08160 (FIV04_08210) - 1839409..1840446 (+) 1038 WP_152468825.1 DUF2804 domain-containing protein -
  FIV04_RS08165 (FIV04_08215) - 1840511..1841359 (+) 849 WP_152468826.1 sterol desaturase family protein -
  FIV04_RS08170 (FIV04_08220) - 1841356..1842474 (-) 1119 WP_150872701.1 flagellin -
  FIV04_RS08175 (FIV04_08225) sbcB 1842838..1844262 (+) 1425 WP_152468827.1 exodeoxyribonuclease I Machinery gene
  FIV04_RS08180 (FIV04_08230) - 1844363..1844734 (+) 372 WP_150872703.1 CidA/LrgA family protein -
  FIV04_RS08185 (FIV04_08235) - 1844736..1845413 (+) 678 WP_150872704.1 CidB/LrgB family autolysis modulator -
  FIV04_RS08190 (FIV04_08240) cdd 1845729..1846616 (+) 888 WP_150872705.1 cytidine deaminase -
  FIV04_RS08195 (FIV04_08245) purT 1846786..1847961 (+) 1176 WP_152468828.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  FIV04_RS08200 (FIV04_08250) - 1848045..1848698 (-) 654 WP_152468829.1 thiopurine S-methyltransferase -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54665.94 Da        Isoelectric Point: 4.7747

>NTDB_id=393486 FIV04_RS08175 WP_152468827.1 1842838..1844262(+) (sbcB) [Vibrio sp. THAF190c]
MQHDSQPTYFFFDYETWGTSPAKDRPSQFAGVRTDQDFNIIGEPLVIYCQPPADYLPAPEAALITRITPQKAMSQGLPEP
EFIAKIHAELSKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRAVHALRPDGIVWPENEEGFP
SFKLEHLSVANGIEHENAHDAMADVIATIEMAKKVKAAQPKMFDYLYNMRHKRKLNELVDIVNMTPLMHVSGMLGKECNY
TSWIVPMAWHPTNQNAVIVIDLAKDPTPLLELDTDALRERLYTKHSELGPDELPVPIKLVQLNKCPILAPAKTLTAENAE
TIGIDRQQCLANLAILREHPEIREKLIGLYSVEREYEKDDDVDTQLYDGFFSPSDKAAMDIIRQTEPNNLAALDISFADE
RIEPLLFRYKARHYPWTLDESEQQKWANHCREFYESRLEEYMLNLENLAHEHENDEKKMAILKAVYQYVEKLAS

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=393486 FIV04_RS08175 WP_152468827.1 1842838..1844262(+) (sbcB) [Vibrio sp. THAF190c]
ATGCAGCACGACTCTCAGCCGACCTACTTCTTCTTCGATTATGAAACTTGGGGGACGAGCCCAGCCAAAGATCGACCAAG
CCAATTTGCGGGTGTTCGCACCGACCAAGATTTCAACATCATTGGTGAGCCTCTGGTTATCTATTGCCAACCGCCAGCTG
ATTATCTACCTGCACCTGAAGCCGCATTGATTACGCGAATCACCCCACAGAAAGCAATGTCACAAGGCTTACCTGAGCCA
GAGTTCATCGCTAAGATTCACGCAGAGTTATCTAAGCCAAACACAACCAGCCTTGGTTACAACAGTATTCGTTTCGATGA
TGAAGTGACACGTTACACCTGTTACCGCAACTTTATCGATCCGTATGCGTGGAGCTGGCAAAACGGTAACTCACGTTGGG
ATCTGTTGGATGTGATGCGCGCGGTGCATGCATTGCGCCCAGATGGCATTGTTTGGCCAGAAAATGAAGAAGGTTTCCCG
AGCTTTAAGCTAGAACATTTGTCTGTTGCTAACGGTATTGAACACGAAAATGCGCACGACGCGATGGCTGACGTTATCGC
AACCATTGAAATGGCGAAGAAAGTTAAAGCTGCTCAACCGAAAATGTTCGACTACTTGTACAACATGCGTCATAAACGCA
AACTGAATGAACTTGTCGACATTGTTAACATGACACCGCTGATGCACGTGTCTGGCATGCTAGGTAAAGAGTGCAATTAC
ACCAGTTGGATTGTGCCGATGGCTTGGCACCCTACCAATCAAAACGCAGTTATCGTTATAGACCTAGCGAAAGATCCAAC
GCCACTGCTTGAGTTAGACACTGATGCGCTGCGCGAAAGGCTCTACACCAAACACAGTGAATTGGGTCCAGACGAACTGC
CTGTACCGATTAAACTCGTGCAACTGAACAAATGCCCTATTCTTGCACCAGCGAAAACACTAACGGCTGAAAACGCTGAA
ACCATTGGCATTGATCGCCAGCAGTGCCTGGCAAACTTAGCGATTCTTCGTGAACACCCAGAGATTCGCGAAAAGCTGAT
TGGTCTTTATTCTGTTGAACGCGAGTACGAGAAAGACGATGATGTTGATACTCAGCTTTACGATGGTTTCTTTTCTCCAT
CAGATAAAGCCGCGATGGATATTATTCGTCAAACTGAACCAAACAACCTCGCTGCACTCGATATCAGCTTTGCCGACGAA
CGTATAGAGCCCCTTCTGTTCCGTTACAAAGCACGTCACTACCCTTGGACGTTAGATGAATCAGAACAGCAAAAATGGGC
GAATCACTGCCGTGAGTTTTACGAAAGTCGACTTGAAGAATACATGCTCAACCTTGAAAATCTTGCTCATGAGCATGAAA
ACGATGAAAAGAAGATGGCAATACTCAAAGCGGTATACCAGTACGTAGAGAAACTCGCGAGCTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-190)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P9B835

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

78.013

99.789

0.778

Multiple sequence alignment