Detailed information NTG0393378

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: HPC60_RS11195
• Genome accession: NZ_CP053671
• Coordinates: 2216572..2217639 (+)
• Length: 355 a.a.
• NCBI ID: WP_179107718.1
• Uniprot ID: -
• Organism: Lactococcus lactis subsp. lactis strain G121
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2211572..2222639

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPC60_RS11170 (HPC60_05920)	yfmH	2212359..2213249 (-)	891	Protein_2202	EF-P 5-aminopentanol modification-associated protein YfmH	-
HPC60_RS11175 (HPC60_05925)	-	2213269..2214219 (-)	951	WP_068164079.1	IS30 family transposase	-
HPC60_RS11180 (HPC60_05930)	-	2214317..2214736 (-)	420	Protein_2204	M16 family metallopeptidase	-
HPC60_RS11185 (HPC60_05935)	yfmF	2214726..2216012 (-)	1287	WP_023164564.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
HPC60_RS11190 (HPC60_05940)	yaaA	2216210..2216572 (+)	363	WP_012898492.1	S4 domain-containing protein YaaA	-
HPC60_RS11195 (HPC60_05945)	recF	2216572..2217639 (+)	1068	WP_179107718.1	DNA replication/repair protein RecF	Machinery gene
HPC60_RS11200 (HPC60_05950)	-	2217735..2218103 (-)	369	WP_179107719.1	carboxymuconolactone decarboxylase family protein	-
HPC60_RS11205 (HPC60_05955)	-	2218181..2218558 (+)	378	WP_012898494.1	MerR family transcriptional regulator	-
HPC60_RS11210 (HPC60_05960)	-	2218608..2219492 (-)	885	WP_223848561.1	alpha/beta hydrolase	-
HPC60_RS11215 (HPC60_05965)	galE	2219613..2220593 (-)	981	WP_023188652.1	UDP-glucose 4-epimerase GalE	-

Sequence

Protein

• Length: 355 a.a.
• Molecular weight: 40970.85 Da
• Isoelectric Point: 6.9852

>NTDB_id=393378 HPC60_RS11195 WP_179107718.1 2216572..2217639(+) (recF) [Lactococcus lactis subsp. lactis strain G121]
MKLKAIELKNFRNYEELKLDFHPNLNIFLGQNAQGKTNILEAIHFLALTRSHRTSHDKELISWSQQEMKVSGVVEKAHAT
IPLEVQLSPKGRIAKANHLKENRLADYIGQLKILMFAPENLELVKGSPATRRKFMDIELGQIHAVYLYDSMRYNRALKER
NAYLKFDKDKIDKNFLSVLDGQLAEHGNKIMLERQNFVDKLEVHAKKIHEQLTHGKENLKIIYNQNVKTDFSKELLSRQD
HDIFRHQTSVGPHRDDLQFFINEINVADFGSQGQQRTVALSIKLAEIDLIFEETGEYPILLLDDVMSELDNHRQLDLIET
SLGKTQTFITTTTLDHLKNLPENLSIFHVNAGTIE

Nucleotide

• Length: 1068 bp

>NTDB_id=393378 HPC60_RS11195 WP_179107718.1 2216572..2217639(+) (recF) [Lactococcus lactis subsp. lactis strain G121]
ATGAAACTCAAAGCAATTGAACTCAAAAATTTTCGTAATTATGAGGAATTAAAACTTGATTTTCATCCTAATCTCAATAT
TTTTTTAGGACAAAATGCTCAAGGGAAAACAAATATTCTTGAGGCGATTCATTTTTTAGCACTCACTCGTAGTCACAGAA
CCAGTCACGATAAAGAGCTCATTTCTTGGTCGCAACAAGAAATGAAGGTCTCAGGAGTCGTTGAAAAAGCTCATGCAACT
ATTCCACTTGAAGTTCAATTAAGTCCCAAAGGGAGAATTGCTAAAGCCAATCATCTCAAAGAAAATCGCTTAGCCGACTA
CATTGGTCAACTAAAAATCTTGATGTTTGCACCTGAAAATTTGGAATTGGTCAAAGGTTCTCCTGCTACCCGCAGAAAAT
TTATGGATATTGAACTGGGACAAATCCATGCGGTTTACCTTTATGATTCCATGCGATATAATCGTGCGTTAAAAGAACGG
AATGCTTATTTAAAATTTGATAAAGACAAAATTGATAAAAATTTTTTAAGTGTTCTTGACGGACAATTAGCTGAACATGG
TAATAAAATCATGCTTGAGCGGCAAAATTTTGTTGATAAACTTGAAGTTCATGCAAAAAAAATCCATGAGCAACTTACTC
ATGGTAAAGAAAATTTAAAAATCATTTATAATCAAAATGTGAAAACTGACTTTTCAAAAGAATTATTGAGCAGACAAGAC
CATGATATTTTTAGGCATCAAACATCGGTTGGCCCTCATCGTGACGATTTACAATTTTTTATCAATGAGATTAATGTTGC
TGATTTTGGTAGTCAAGGACAACAACGAACCGTTGCTCTCTCAATTAAATTAGCAGAAATTGATTTAATTTTTGAAGAGA
CTGGTGAGTATCCGATTTTACTTTTAGATGATGTCATGAGTGAATTAGACAATCATCGTCAACTTGATTTGATTGAAACA
AGTTTGGGTAAAACACAAACTTTTATAACTACAACTACTCTTGATCATCTTAAAAATTTACCTGAAAATCTGAGTATTTT
CCATGTTAATGCTGGAACCATTGAATAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-353)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	55	100	0.558
recF	Bacillus subtilis subsp. subtilis str. 168	46.264	98.028	0.454