Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   GCB94_RS14300 Genome accession   NZ_CP045306
Coordinates   3007723..3008256 (+) Length   177 a.a.
NCBI ID   WP_003635615.1    Uniprot ID   D3HKN3
Organism   Legionella longbeachae strain B1445CHC     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3002723..3013256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GCB94_RS14285 (GCB94_14220) - 3003271..3004770 (-) 1500 WP_003635625.1 glycosyltransferase family 39 protein -
  GCB94_RS14290 (GCB94_14225) - 3005110..3006480 (+) 1371 WP_003635620.1 hypothetical protein -
  GCB94_RS14295 (GCB94_14230) - 3006772..3007623 (+) 852 WP_223800149.1 polysaccharide deacetylase family protein -
  GCB94_RS14300 (GCB94_14235) fimT 3007723..3008256 (+) 534 WP_003635615.1 GspH/FimT family pseudopilin Machinery gene
  GCB94_RS14305 (GCB94_14240) pilV 3008269..3008814 (+) 546 WP_003635614.1 type IV pilus modification protein PilV -
  GCB94_RS14310 (GCB94_14245) - 3008811..3009878 (+) 1068 WP_012979329.1 PilW family protein -
  GCB94_RS14315 (GCB94_14250) - 3009875..3010444 (+) 570 WP_012979330.1 pilus assembly protein -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 18726.72 Da        Isoelectric Point: 6.8740

>NTDB_id=393323 GCB94_RS14300 WP_003635615.1 3007723..3008256(+) (fimT) [Legionella longbeachae strain B1445CHC]
MKVIIINKQGFTLIELLITILVFCILLVLAIPALSSLLMNNRLIAKTDMFVNSLNYARNTALGESINVVVCPFGVAQSTT
CGGSWSNGWIVITQPSVGTSTLLQSQQLFSVDPVLSGNVPSVVFDPHGLTTTSGNFKFCDSRGGAFARSIEVLATGFVQS
GATPGQAVWDNSALTCP

Nucleotide


Download         Length: 534 bp        

>NTDB_id=393323 GCB94_RS14300 WP_003635615.1 3007723..3008256(+) (fimT) [Legionella longbeachae strain B1445CHC]
TTGAAAGTCATAATAATAAACAAGCAGGGATTCACATTAATTGAGCTCTTAATCACTATATTAGTTTTTTGTATTTTATT
AGTTTTAGCAATACCGGCATTGAGTAGCCTGCTGATGAATAATCGCCTGATTGCCAAAACAGACATGTTCGTAAATTCGC
TTAATTATGCGCGCAATACCGCTTTAGGCGAGTCAATCAACGTTGTAGTTTGTCCATTTGGCGTAGCTCAATCGACAACA
TGCGGCGGTAGTTGGAGCAATGGATGGATTGTGATCACACAACCTTCTGTAGGTACGAGCACCTTATTACAAAGCCAACA
ACTTTTTTCTGTTGATCCTGTACTTTCAGGCAATGTACCCAGCGTAGTATTTGACCCACACGGATTGACAACGACATCAG
GTAACTTTAAGTTTTGCGACAGTAGAGGAGGGGCATTTGCTCGCTCCATAGAAGTATTGGCAACTGGATTCGTACAATCA
GGCGCAACCCCCGGACAGGCAGTTTGGGATAACAGCGCGCTTACATGTCCTTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-30)

Type II transport protein GspH (GspH)

(49-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D3HKN3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Legionella pneumophila strain Lp02

60.714

94.915

0.576

Multiple sequence alignment